Publications

These are the LAST 12 MONTHS of publications from the CMI membership team.

To see or search all of the publications, visit the archives page.

Article	Authors	Journal	Date	Abstract	Reach
Antiretroviral Drugs for Treatment and Prevention of HIV in Adults: 2024 Recommendations of the International Antiviral Society-USA Panel.	Rajesh T Gandhi, Raphael J Landovitz, Paul E Sax, Davey M Smith, Sandra A Springer, Huldrych F Günthard, Melanie A Thompson, Roger J Bedimo, Constance A Benson, Susan P Buchbinder, Brenda E Crabtree-Ramirez, Carlos Del Rio, Ellen F Eaton, Joseph J Eron, Jennifer F Hoy, Clara Lehmann, Jean-Michel Molina, Donna M Jacobsen, Michael S Saag	JAMA	2024-12-01	Abstract
Fostering healthy cognitive ageing in people living with HIV.	Lucette A Cysique, Jules Levin, Chris Howard, Jeff Taylor, John Rule, Jane Costello, Jane Bruning, Priscilla Njeri, Amy B Mullens, Edwina Wright, Hetta Gouse, Kirstie Daken, Mattia Trunfio, Htein Linn Aung, Reuben N Robbins, Christopher M Ferraris, Jose A Muñoz-Moreno, Steven P Woods, David J Moore, Christopher Power, Pui Li Wong, Kejal Hasmukharay, Primrose Nyamayaro, Jaime Vera, Reena Rajasuriar, Robert K Heaton, Karl Goodkin, Scott Letendre, Ronald J Ellis, Bruce J Brew, Sean B Rourke,	The Lancet. HIV	2024-11-27	Abstract
Interleukin-2-secreting T helper cells promote extra-follicular B cell maturation via intrinsic regulation of a B cell mTOR-AKT-Blimp-1 axis.	Caterina E Faliti, Maria Mesina, Jinyong Choi, Simon Bélanger, Monique A Marshall, Christopher M Tipton, Sakeenah Hicks, Prashanti Chappa, Maria A Cardenas, Mohamed Abdel-Hakeem, Theresa C Thinnes, Christopher Cottrell, Christopher D Scharer, William R Schief, David Nemazee, Matthew C Woodruff, John M Lindner, Ignacio Sanz, Shane Crotty	Immunity	2024-11-26	Abstract
Tamm-Horsfall protein augments neutrophil NETosis during urinary tract infection.	Vicki Mercado-Evans, Holly Branthoover, Claude Chew, Camille Serchejian, Alexander B Saltzman, Marlyd E Mejia, Jacob J Zulk, Ingrid Cornax, Victor Nizet, Kathryn A Patras	JCI Insight	2024-11-26	Abstract
Carmaphycin B-Based Proteasome Inhibitors to Treat Human African Trypanosomiasis: Structure-Activity Relationship and Efficacy.	Lawrence J Liu, Karol R Francisco, Yujie Uli Sun, Mateus Sá Magalhães Serafim, Dilini K Amarasinghe, Thaiz R Teixeira, Bobby Lucero, Thales Kronenberger, Waad Elsayed, Hala Elwakeel, Momen Al-Hindy, Jehad Almaliti, William H Gerwick, Anthony J O'Donoghue, Conor R Caffrey	ACS Infectious Diseases	2024-11-26	Abstract
Heterozygous BTNL8 variants in individuals with multisystem inflammatory syndrome in children (MIS-C).	Evangelos Bellos, Dilys Santillo, Pierre Vantourout, Heather R Jackson, Amedine Duret, Henry Hearn, Yoann Seeleuthner, Estelle Talouarn, Stephanie Hodeib, Harsita Patel, Oliver Powell, Sophya Yeoh, Sobia Mustafa, Dominic Habgood-Coote, Samuel Nichols, Leire Estramiana Elorrieta, Giselle D'Souza, Victoria J Wright, Diego Estrada-Rivadeneyra, Adriana H Tremoulet, Kirsten B Dummer, Stejara A Netea, Antonio Condino-Neto, Yu Lung Lau, Esmeralda Núñez Cuadros, Julie Toubiana, Marisol Holanda Pena, Frédéric Rieux-Laucat, Charles-Edouard Luyt, Filomeen Haerynck, Jean Louis Mège, Samya Chakravorty, Elie Haddad, Marie-Paule Morin, Özge Metin Akcan, Sevgi Keles, Melike Emiroglu, Gulsum Alkan, Sadiye Kübra Tüter Öz, Sefika Elmas Bozdemir, Guillaume Morelle, Alla Volokha, Yasemin Kendir-Demirkol, Betul Sözeri, Taner Coskuner, Aysun Yahsi, Belgin Gulhan, Saliha Kanik-Yuksek, Gulsum Iclal Bayhan, Aslinur Ozkaya-Parlakay, Osman Yesilbas, Nevin Hatipoglu, Tayfun Ozcelik, Alexandre Belot, Emilie Chopin, Vincent Barlogis, Esra Sevketoglu, Emin Menentoglu, Zeynep Gokce Gayretli Aydin, Marketa Bloomfield, Suzan A AlKhater, Cyril Cyrus, Yuriy Stepanovskiy, Anastasiia Bondarenko, Fatma Nur Öz, Meltem Polat, Jiří Fremuth, Jan Lebl, Amyrath Geraldo, Emmanuelle Jouanguy, , , , Michael J Carter, Paul Wellman, Mark Peters, Rebeca Pérez de Diego, Lindsey Ann Edwards, Christopher Chiu, Mahdad Noursadeghi, Alexandre Bolze, Chisato Shimizu, Myrsini Kaforou, Melissa Shea Hamilton, Jethro A Herberg, Erica G Schmitt, Agusti Rodriguez-Palmero, Aurora Pujol, Jihoon Kim, Aurélie Cobat, Laurent Abel, Shen-Ying Zhang, Jean-Laurent Casanova, Taco W Kuijpers, Jane C Burns, Michael Levin, Adrian C Hayday, Vanessa Sancho-Shimizu	The Journal Of Experimental Medicine	2024-11-22	Abstract
Community utilization of a co-created COVID-19 testing program in a US/Mexico border community.	Breanna J Reyes, Stephenie Tinoco Calvillo, Arleth A Escoto, Angel Lomeli, Maria Linda Burola, Luis Gay, Ariel Cohen, Isabel Villegas, Linda Salgin, Kelli L Cain, Dylan Pilz, Paul Watson, Bill Oswald, Cesar Arevalo, Jessica Sanchez, Marjorie Richardson, Jennifer Nelson, Pricilla Villanueva, Garrett McGaugh, Ilya Zaslavsky, Robert H Tukey, Nicole A Stadnick, Borsika A Rabin, Louise C Laurent, Marva Seifert	BMC Public Health	2024-11-18	Abstract
Phase I study of a recombinant attenuated oncolytic virus, MEDI5395 (NDV-GM-CSF), administered systemically in combination with durvalumab in patients with advanced solid tumors.	Diwakar Davar, Benedito A Carneiro, Grace K Dy, Siddharth Sheth, Mitesh J Borad, Kevin J Harrington, Sandip P Patel, Evanthia Galanis, Adel Samson, Sonia Agrawal, Zhongying Chen, Chunling Fan, Maozhen Gong, Jenny Burton, Eric Tu, Nicholas Durham, Kevin Laubscher, Fernanda Arnaldez, Dmitriy Zamarin	Journal For Immunotherapy Of Cancer	2024-11-17	Abstract
Possible Missing Sources of Atmospheric Glyoxal Part II: Oxidation of Toluene Derived from the Primary Production of Marine Microorganisms.	Renee T Williams, Annika Caspers-Brown, Jennifer Michaud, Natalie Stevens, Michael Meehan, Camille M Sultana, Christopher Lee, Francesca Malfatti, Yanyan Zhou, Farooq Azam, Kimberly A Prather, Pieter Dorrestein, Michael D Burkart, Robert S Pomeroy	Metabolites	2024-11-16	Abstract
Distinct pathways for evolution of enhanced receptor binding and cell entry in SARS-like bat coronaviruses.	Alexandra L Tse, Cory M Acreman, Inna Ricardo-Lax, Jacob Berrigan, Gorka Lasso, Toheeb Balogun, Fiona L Kearns, Lorenzo Casalino, Georgia L McClain, Amartya Mudry Chandran, Charlotte Lemeunier, Rommie E Amaro, Charles M Rice, Rohit K Jangra, Jason S McLellan, Kartik Chandran, Emily Happy Miller	PLoS Pathogens	2024-11-15	Abstract
Development of an Antiviral Medicinal Plant and Natural Product Database (avMpNp Database) from Biodiversity.	Daniela Quadros de Azevedo, João Vinícius Viera Nóia, Yasmim Carla M Ribeiro, Raphael Alves Dos Reis, Paulo Henrique Otoni Ribeiro, Gustavo Almeida Moura, Pamela Mendes, Ana Beatriz Barbosa de Souza, Sofia Carpini Mermejo, Mateus Sá Magalhães Serafim, Thaís Helena Maciel Fernandes, Anthony J O'Donoghue, Alessandra C Faria Aguiar Campos, Sérgio Vale Aguiar Campos, Vinícius Gonçalves Maltarollo, Rachel Oliveira Castilho	Chemistry & Biodiversity	2024-11-15	Abstract
Physiological cost of antibiotic resistance: Insights from a ribosome variant in bacteria.	Eun Chae Moon, Tushar Modi, Dong-Yeon D Lee, Danis Yangaliev, Jordi Garcia-Ojalvo, S Banu Ozkan, Gürol M Süel	Science Advances	2024-11-15	Abstract
Author Correction: Whole-body metabolic modelling reveals microbiome and genomic interactions on reduced urine formate levels in Alzheimer's disease.	Filippo Martinelli, Almut Heinken, Ann-Kristin Henning, Maria A Ulmer, Tim Hensen, Antonio González, Matthias Arnold, Sanjay Asthana, Kathrin Budde, Corinne D Engelman, Mehrbod Estaki, Hans-Jörgen Grabe, Margo B Heston, Sterling Johnson, Gabi Kastenmüller, Cameron Martino, Daniel McDonald, Federico E Rey, Ingo Kilimann, Olive Peters, Xiao Wang, Eike Jakob Spruth, Anja Schneider, Klaus Fliessbach, Jens Wiltfang, Niels Hansen, WenzelGlanz, Katharina Buerger, Daniel Janowitz, Christoph Laske, Matthias H Munk, Annika Spottke, Nina Roy, Matthias Nauck, Stefan Teipel, Rob Knight, Rima F Kaddurah-Daouk, Barbara B Bendlin, Johannes Hertel, Ines Thiele	Scientific Reports	2024-11-12	Abstract
Comparative gut microbiome research through the lens of ecology: theoretical considerations and best practices.	Samuel Degregori, Xiaolin Wang, Akhil Kommala, Noah Schulhof, Sadaf Moradi, Allison MacDonald, Kaitlin Eblen, Sophia Jukovich, Emma Smith, Emily Kelleher, Kota Suzuki, Zoey Hall, Rob Knight, Katherine Ryan Amato	Biological Reviews Of The Cambridge Philosophical Society	2024-11-12	Abstract
Diversity of transcriptional regulatory adaptation in E. coli.	Christopher Dalldorf, Ying Hefner, Richard Szubin, Josefin Johnsen, Elsayed Mohamed, Gaoyuan Li, Jayanth Krishnan, Adam M Feist, Bernhard O Palsson, Daniel C Zielinski	Molecular Biology And Evolution	2024-11-12	Abstract
Microbial solutions must be deployed against climate catastrophe.	Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert	Nature Reviews. Microbiology	2024-11-11	Abstract
Microbial solutions must be deployed against climate catastrophe.	Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert	Nature Microbiology	2024-11-11	Abstract
Microbial solutions must be deployed against climate catastrophe.	Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert	Npj Biodiversity	2024-11-11	Abstract
Microbial solutions must be deployed against climate catastrophe.	Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert	Communications Biology	2024-11-11	Abstract
Microbial solutions must be deployed against climate catastrophe.	Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert	NPJ Biofilms And Microbiomes	2024-11-11	Abstract
Microbial solutions must be deployed against climate catastrophe.	Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert	Nature Communications	2024-11-11	Abstract
Microbial solutions must be deployed against climate catastrophe.	Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert	MSystems	2024-11-11	Abstract
Multiplatform metabolomic interlaboratory study of a whole human stool candidate reference material from omnivore and vegan donors.	Abraham Kuri Cruz, Marina Amaral Alves, Thorkell Andresson, Amanda L Bayless, Kent J Bloodsworth, John A Bowden, Kevin Bullock, Meagan C Burnet, Fausto Carnevale Neto, Angelina Choy, Clary B Clish, Sneha P Couvillion, Raquel Cumeras, Lucas Dailey, Guido Dallmann, W Clay Davis, Amy A Deik, Alex M Dickens, Danijel Djukovic, Pieter C Dorrestein, Josie G Eder, Oliver Fiehn, Roberto Flores, Helen Gika, Kehau A Hagiwara, Tuan Hai Pham, James J Harynuk, Juan J Aristizabal-Henao, David W Hoyt, Focant Jean-François, Matilda Kråkström, Amit Kumar, Jennifer E Kyle, Santosh Lamichhane, Yuan Li, Seo Lin Nam, Rupasri Mandal, A Paulina de la Mata, Michael J Meehan, Thomas Meikopoulos, Thomas O Metz, Thomai Mouskeftara, Nathalie Munoz, G A Nagana Gowda, Matej Orešic, Morgan Panitchpakdi, Stefanuto Pierre-Hugues, Daniel Raftery, Blake Rushing, Tracey Schock, Harold Seifried, Stephanie Servetas, Tong Shen, Susan Sumner, Kieran S Tarazona Carrillo, Dejong Thibaut, Jesse B Trejo, Lieven Van Meulebroek, Lynn Vanhaecke, Christina Virgiliou, Kelly C Weldon, David S Wishart, Lu Zhang, Jiamin Zheng, Sandra Da Silva	Metabolomics : Official Journal Of The Metabolomic Society	2024-11-04	Abstract
Digital PCR in Virology: Current Applications and Future Perspectives.	David Gleerup, Wim Trypsteen, Stephanie I Fraley, Ward De Spiegelaere	Molecular Diagnosis & Therapy	2024-11-02	Abstract
Microbiome divergence of marine gastropod species separated by the Isthmus of Panama.	Alexander T Neu, Mark E Torchin, Eric E Allen, Kaustuv Roy	Applied And Environmental Microbiology	2024-10-31	Abstract
Gut and oral microbial compositional differences in women with breast cancer, women with ductal carcinoma , and healthy women.	Emma McCune, Anukriti Sharma, Breanna Johnson, Tess O'Meara, Sarah Theiner, Maribel Campos, Diane Heditsian, Susie Brain, Jack A Gilbert, Laura Esserman, Michael J Campbell	MSystems	2024-10-29	Abstract
Disparities in steatosis prevalence in the United States by Race or Ethnicity according to the 2023 criteria.	Luis Antonio Díaz, Jeffrey V Lazarus, Eduardo Fuentes-López, Francisco Idalsoaga, Gustavo Ayares, Hailemichael Desaleng, Pojsakorn Danpanichkul, Thomas G Cotter, Winston Dunn, Francisco Barrera, Karn Wijarnpreecha, Mazen Noureddin, Naim Alkhouri, Ashwani K Singal, Robert J Wong, Zobair M Younossi, Mary E Rinella, Patrick S Kamath, Ramon Bataller, Rohit Loomba, Marco Arrese, Juan Pablo Arab	Communications Medicine	2024-10-29	Abstract
Topical ivermectin treatment of rosacea changes the bacterial microbiome of the skin.	Teruaki Nakatsuji, Joyce Y Cheng, Anna Butcher, Faiza Shafiq, Olive Osuoji, Richard L Gallo, Tissa R Hata	The Journal Of Investigative Dermatology	2024-10-29	Abstract
Associations Between Gut Microbiota Diversity and a Host Fitness Proxy in a Naturalistic Experiment Using Threespine Stickleback Fish.	Andreas Härer, Ken A Thompson, Dolph Schluter, Diana J Rennison	Molecular Ecology	2024-10-28	Abstract
An integrated view of the structure and function of the human 4D nucleome.	, Job Dekker, Betul Akgol Oksuz, Yang Zhang, Ye Wang, Miriam K Minsk, Shuzhen Kuang, Liyan Yang, Johan H Gibcus, Nils Krietenstein, Oliver J Rando, Jie Xu, Derek H Janssens, Steven Henikoff, Alexander Kukalev, Andréa Willemin, Warren Winick-Ng, Rieke Kempfer, Ana Pombo, Miao Yu, Pradeep Kumar, Liguo Zhang, Andrew S Belmont, Takayo Sasaki, Tom van Schaik, Laura Brueckner, Daan Peric-Hupkes, Bas van Steensel, Ping Wang, Haoxi Chai, Minji Kim, Yijun Ruan, Ran Zhang, Sofia A Quinodoz, Prashant Bhat, Mitchell Guttman, Wenxin Zhao, Shu Chien, Yuan Liu, Sergey V Venev, Dariusz Plewczynski, Ibai Irastorza Azcarate, Dominik Szabó, Christoph J Thieme, Teresa Szczepińska, Mateusz Chiliński, Kaustav Sengupta, Mattia Conte, Andrea Esposito, Alex Abraham, Ruochi Zhang, Yuchuan Wang, Xingzhao Wen, Qiuyang Wu, Yang Yang, Jie Liu, Lorenzo Boninsegna, Asli Yildirim, Yuxiang Zhan, Andrea Maria Chiariello, Simona Bianco, Lindsay Lee, Ming Hu, Yun Li, R Jordan Barnett, Ashley L Cook, Daniel J Emerson, Claire Marchal, Peiyao Zhao, Peter Park, Burak H Alver, Andrew Schroeder, Rahi Navelkar, Clara Bakker, William Ronchetti, Shannon Ehmsen, Alexander Veit, Nils Gehlenborg, Ting Wang, Daofeng Li, Xiaotao Wang, Mario Nicodemi, Bing Ren, Sheng Zhong, Jennifer E Phillips-Cremins, David M Gilbert, Katherine S Pollard, Frank Alber, Jian Ma, William S Noble, Feng Yue	BioRxiv : The Preprint Server For Biology	2024-10-27	Abstract
Staphylococcus felis C4 exhibits in vitro antimicrobial activity against methicillin-resistant Staphylococcus pseudintermedius in a novel canine skin explant model.	Mayane Faccin, Alan M O'Neill, Sara D Lawhon, Kate A Worthing, Dominique J Wiener, Richard L Gallo, Aline Rodrigues Hoffmann	Veterinary Dermatology	2024-10-25	Abstract
Microbial solutions must be deployed against climate catastrophe.	Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert	The ISME Journal	2024-10-25	Abstract
iModulonMiner and PyModulon: Software for unsupervised mining of gene expression compendia.	Anand V Sastry, Yuan Yuan, Saugat Poudel, Kevin Rychel, Reo Yoo, Cameron R Lamoureux, Gaoyuan Li, Joshua T Burrows, Siddharth Chauhan, Zachary B Haiman, Tahani Al Bulushi, Yara Seif, Bernhard O Palsson, Daniel C Zielinski	PLoS Computational Biology	2024-10-23	Abstract
Cardiorespiratory Fitness and Sleep, but not Physical Activity, are Associated with Functional Connectivity in Older Adults.	David Wing, Bart Roelands, Julie Loebach Wetherell, Jeanne F Nichols, Romain Meeusen, Job G Godino, Joshua S Shimony, Abraham Z Snyder, Tomoyuki Nishino, Ginger E Nicol, Guy Nagels, Lisa T Eyler, Eric J Lenze	Sports Medicine - Open	2024-10-19	Abstract
Annotating full-scan MS data using tandem MS libraries.	Shipei Xing, Vincent Charron-Lamoureux, Yasin El Abiead, Pieter C Dorrestein	BioRxiv : The Preprint Server For Biology	2024-10-17	Abstract
Two-Dimensional Liquid Chromatography Tandem Mass Spectrometry Untangles the Deep Metabolome of Marine Dissolved Organic Matter.	Stilianos Papadopoulos Lambidis, Tilman Schramm, Karoline Steuer-Lodd, Shane Farrell, Paolo Stincone, Robin Schmid, Irina Koester, Ralph Torres, Thorsten Dittmar, Lihini Aluwihare, Carsten Simon, Daniel Petras	Environmental Science & Technology	2024-10-16	Abstract
Association Between Dietary Patterns and Subgingival Microbiota: Results From the Oral Infections, Glucose Intolerance, and Insulin Resistance Study (ORIGINS).	Rebecca L Molinsky, Abigail J Johnson, Lisa Marotz, Sumith Roy, Bruno Bohn, Charlene E Goh, Ching-Yuan Chen, Bruce Paster, Rob Knight, Jeanine Genkinger, Panos N Papapanou, David R Jacobs, Ryan T Demmer	Journal Of Clinical Periodontology	2024-10-12	Abstract
Differential gut microbiota composition in β-Thalassemia patients and its correlation with iron overload.	Poochit Nonejuie, Alisa Wilantho, Daniel McDonald, Htut Htut Htoo, Jenjira Chalerm, Anupriya Tripathi, Chumpol Ngamphiw, Sissades Tongsima, Rob Knight, Kittiphong Paiboonsukwong, Suthat Fucharoen	Scientific Reports	2024-10-11	Abstract
Bioelectronic tools for understanding the universal language of electrical signaling across species and kingdoms.	Shivani Shukla, Colin J Comerci, Gürol M Süel, Zeinab Jahed	Biosensors & Bioelectronics	2024-10-11	Abstract
Advancing stem cell technologies for conservation of wildlife biodiversity.	Ashlee M Hutchinson, Ruth Appeltant, Tom Burdon, Qiuye Bao, Rhishikesh Bargaje, Andrea Bodnar, Stuart Chambers, Pierre Comizzoli, Laura Cook, Yoshinori Endo, Bob Harman, Katsuhiko Hayashi, Thomas Hildebrandt, Marisa L Korody, Uma Lakshmipathy, Jeanne F Loring, Clara Munger, Alex H M Ng, Ben Novak, Manabu Onuma, Sara Ord, Monique Paris, Andrew J Pask, Francisco Pelegri, Martin Pera, Ryan Phelan, Benyamin Rosental, Oliver A Ryder, Woranop Sukparangsi, Gareth Sullivan, Nicole Liling Tay, Nikki Traylor-Knowles, Shawn Walker, Antonia Weberling, Deanne J Whitworth, Suzannah A Williams, Jessye Wojtusik, Jun Wu, Qi-Long Ying, Thomas P Zwaka, Timo N Kohler	Development (Cambridge, England)	2024-10-09	Abstract
The intricate pathogenicity of group a : A comprehensive update.	Helena Bergsten, Victor Nizet	Virulence	2024-10-07	Abstract
Pan-genome-scale metabolic modeling of reveals functionally distinct groups.	Maxwell Neal, William Brakewood, Michael Betenbaugh, Karsten Zengler	MSystems	2024-10-04	Abstract
Diversity of human salivary heparan sulfate.	Charlotte B Spliid, Sanjay Mehta, Mark M Fuster, Cameron Martino, Claire L Morris, Nharae Lee, Ivan Florentino, Khang Tong, Lin Liu, Gail Ackermann, Rob Knight, Jeffrey D Esko, Tatiana Hurtado De Mendoza	Glycobiology	2024-10-03	Abstract
Environment-independent distribution of mutational effects emerges from microscopic epistasis.	Sarah M Ardell, Alena Martsul, Milo S Johnson, Sergey Kryazhimskiy	Science (New York, N.Y.)	2024-10-03	Abstract
Social behaviour mediates the microbiome response to antibiotic treatment in a wild mammal.	Bianca R P Brown, Allison E Williams, Kate A Sabey, Aaron Onserio, John Ewoi, Se Jin Song, Rob Knight, Vanessa O Ezenwa	Proceedings. Biological Sciences	2024-10-02	Abstract
Study of impacts of two types of cellular aging on the yeast bud morphogenesis.	Kevin Tsai, Zhen Zhou, Jiadong Yang, Zhiliang Xu, Shixin Xu, Roya Zandi, Nan Hao, Weitao Chen, Mark Alber	PLoS Computational Biology	2024-09-30	Abstract
Receptor and metabolic insights on the ability of caffeine to prevent alcohol-induced stimulation of mesolimbic dopamine transmission.	Valentina Bassareo, Riccardo Maccioni, Giuseppe Talani, Simone Zuffa, Yasin El Abiead, Irene Lorrai, Tomoya Kawamura, Sofia Pantis, Roberta Puliga, Romina Vargiu, Daniele Lecca, Paolo Enrico, Alessandra Peana, Laura Dazzi, Pieter C Dorrestein, Pietro Paolo Sanna, Enrico Sanna, Elio Acquas	Translational Psychiatry	2024-09-28	Abstract
SpLitteR: diploid genome assembly using TELL-Seq linked-reads and assembly graphs.	Ivan Tolstoganov, Zhoutao Chen, Pavel Pevzner, Anton Korobeynikov	PeerJ	2024-09-27	Abstract
Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data.	Abzer K Pakkir Shah, Axel Walter, Filip Ottosson, Francesco Russo, Marcelo Navarro-Diaz, Judith Boldt, Jarmo-Charles J Kalinski, Eftychia Eva Kontou, James Elofson, Alexandros Polyzois, Carolina González-Marín, Shane Farrell, Marie R Aggerbeck, Thapanee Pruksatrakul, Nathan Chan, Yunshu Wang, Magdalena Pöchhacker, Corinna Brungs, Beatriz Cámara, Andrés Mauricio Caraballo-Rodríguez, Andres Cumsille, Fernanda de Oliveira, Kai Dührkop, Yasin El Abiead, Christian Geibel, Lana G Graves, Martin Hansen, Steffen Heuckeroth, Simon Knoblauch, Anastasiia Kostenko, Mirte C M Kuijpers, Kevin Mildau, Stilianos Papadopoulos Lambidis, Paulo Wender Portal Gomes, Tilman Schramm, Karoline Steuer-Lodd, Paolo Stincone, Sibgha Tayyab, Giovanni Andrea Vitale, Berenike C Wagner, Shipei Xing, Marquis T Yazzie, Simone Zuffa, Martinus de Kruijff, Christine Beemelmanns, Hannes Link, Christoph Mayer, Justin J J van der Hooft, Tito Damiani, Tomáš Pluskal, Pieter Dorrestein, Jan Stanstrup, Robin Schmid, Mingxun Wang, Allegra Aron, Madeleine Ernst, Daniel Petras	Nature Protocols	2024-09-20	Abstract
A living organoid biobank of patients with Crohn's disease reveals molecular subtypes for personalized therapeutics.	Courtney Tindle, Ayden G Fonseca, Sahar Taheri, Gajanan D Katkar, Jasper Lee, Priti Maity, Ibrahim M Sayed, Stella-Rita Ibeawuchi, Eleadah Vidales, Rama F Pranadinata, Mackenzie Fuller, Dominik L Stec, Mahitha Shree Anandachar, Kevin Perry, Helen N Le, Jason Ear, Brigid S Boland, William J Sandborn, Debashis Sahoo, Soumita Das, Pradipta Ghosh	Cell Reports. Medicine	2024-09-20	Abstract
Genome-scale models in human metabologenomics.	Adil Mardinoglu, Bernhard Ø Palsson	Nature Reviews. Genetics	2024-09-19	Abstract
CyuR is a dual regulator for L-cysteine dependent antimicrobial resistance in Escherichia coli.	Irina A Rodionova, Hyun Gyu Lim, Ye Gao, Dmitry A Rodionov, Ying Hutchison, Richard Szubin, Christopher Dalldorf, Jonathan Monk, Bernhard O Palsson	Communications Biology	2024-09-17	Abstract
Clearing the plate: a strategic approach to mitigate well-to-well contamination in large-scale microbiome studies.	Caitriona Brennan, Pedro Belda-Ferre, Simone Zuffa, Vincent Charron-Lamoureux, Ipsita Mohanty, Gail Ackermann, Celeste Allaband, Madison Ambre, Tara Boyer, MacKenzie Bryant, Kalen Cantrell, Antonio Gonzalez, Daniel McDonald, Rodolfo A Salido, Se Jin Song, Gillian Wright, Pieter C Dorrestein, Rob Knight	MSystems	2024-09-16	Abstract
Novel weapon-aided plant protection in the underground battlefield.	Seonghan Jang, Jin-Soo Son, Eric A Schmelz, Choong-Min Ryu	Plant Signaling & Behavior	2024-09-16	Abstract
A single diiron enzyme catalyses the oxidative rearrangement of tryptophan to indole nitrile.	Sanjoy Adak, Naike Ye, Logan A Calderone, Meng Duan, Wilson Lubeck, Rebecca J B Schäfer, April L Lukowski, K N Houk, Maria-Eirini Pandelia, Catherine L Drennan, Bradley S Moore	Nature Chemistry	2024-09-16	Abstract
Organic anion transporters in remote sensing and organ crosstalk.	Jeffry C Granados, Sanjay K Nigam	Pharmacology & Therapeutics	2024-09-14	Abstract
Machine learning reveals the transcriptional regulatory network and circadian dynamics of PCC 7942.	Yuan Yuan, Tahani Al Bulushi, Anand V Sastry, Cigdem Sancar, Richard Szubin, Susan S Golden, Bernhard O Palsson	Proceedings Of The National Academy Of Sciences Of The United States Of America	2024-09-13	Abstract
Machine-Learning Analysis of Streptomyces coelicolor Transcriptomes Reveals a Transcription Regulatory Network Encompassing Biosynthetic Gene Clusters.	Yongjae Lee, Donghui Choe, Bernhard O Palsson, Byung-Kwan Cho	Advanced Science (Weinheim, Baden-Wurttemberg, Germany)	2024-09-12	Abstract
Protocol to establish an accelerated murine model for Helicobacter-induced gastric cancer.	Prerna Bali, Ivonne Lozano-Pope, Jonathan Hernandez, Monica V Estrada, Christopher Benner, Marygorret Obonyo	STAR Protocols	2024-09-11	Abstract
Y and Mitochondrial Chromosomes in the Heterogeneous Stock Rat Population.	Faith Okamoto, Apurva S Chitre, Thiago Missfeldt Sanches, Denghui Chen, Daniel Munro, Allegra T Aron, Angela Beeson, Hannah V Bimschleger, Maya Eid, Angel G Garcia Martinez, Wenyan Han, Katie Holl, Tyler Jackson, Benjamin B Johnson, Christopher P King, Brittany N Kuhn, Alexander C Lamparelli, Alesa H Netzley, Khai-Minh H Nguyen, Beverly F Peng, Jordan A Tripi, Tengfei Wang, Kendra S Ziegler, Douglas J Adams, Amelie Baud, Lieselot L G Carrette, Hao Chen, Giordano de Guglielmo, Pieter Dorrestein, Olivier George, Keita Ishiwari, Monica M Jablonski, Thomas C Jhou, Marsida Kallupi, Rob Knight, Paul J Meyer, Leah C Solberg Woods, Oksana Polesskaya, Abraham A Palmer	G3 (Bethesda, Md.)	2024-09-09	Abstract
Distinct mucosal endotypes as initiators and drivers of rheumatoid arthritis.	V Michael Holers, Kristen M Demoruelle, Jane H Buckner, Eddie A James, Gary S Firestein, William H Robinson, Allen C Steere, Fan Zhang, Jill M Norris, Kristine A Kuhn, Kevin D Deane	Nature Reviews. Rheumatology	2024-09-09	Abstract
Plasma cell-free RNA signatures of inflammatory syndromes in children.	Conor J Loy, Venice Servellita, Alicia Sotomayor-Gonzalez, Andrew Bliss, Joan S Lenz, Emma Belcher, Will Suslovic, Jenny Nguyen, Meagan E Williams, Miriam Oseguera, Michael A Gardiner, , , Jong-Ha Choi, Hui-Mien Hsiao, Hao Wang, Jihoon Kim, Chisato Shimizu, Adriana H Tremoulet, Meghan Delaney, Roberta L DeBiasi, Christina A Rostad, Jane C Burns, Charles Y Chiu, Iwijn De Vlaminck	Proceedings Of The National Academy Of Sciences Of The United States Of America	2024-09-06	Abstract
Human milk variation is shaped by maternal genetics and impacts the infant gut microbiome.	Kelsey E Johnson, Timothy Heisel, Mattea Allert, Annalee Fürst, Nikhila Yerabandi, Dan Knights, Katherine M Jacobs, Eric F Lock, Lars Bode, David A Fields, Michael C Rudolph, Cheryl A Gale, Frank W Albert, Ellen W Demerath, Ran Blekhman	Cell Genomics	2024-09-06	Abstract
Hepatic immune regulation and sex disparities.	Patrizia Burra, Alberto Zanetto, Bernd Schnabl, Thomas Reiberger, Aldo J Montano-Loza, Rosanna Asselta, Tom Hemming Karlsen, Frank Tacke	Nature Reviews. Gastroenterology & Hepatology	2024-09-05	Abstract
Gut Microbiome Compositional and Functional Features Associate with Alzheimer's Disease Pathology.	Jea Woo Kang, Lora A Khatib, Margo B Heston, Amanda H Dilmore, Jennifer S Labus, Yuetiva Deming, Leyla Schimmel, Colette Blach, Daniel McDonald, Antonio Gonzalez, MacKenzie Bryant, Karenina Sanders, Ara Schwartz, Tyler K Ulland, Sterling C Johnson, Sanjay Asthana, Cynthia M Carlsson, Nathaniel A Chin, Kaj Blennow, Henrik Zetterberg, Federico E Rey, , Rima Kaddurah-Daouk, Rob Knight, Barbara B Bendlin	MedRxiv : The Preprint Server For Health Sciences	2024-09-05	Abstract
Pharmacokinetics, Safety and Tolerability of Single-dose or Multiple-dose Cefiderocol in Hospitalized Pediatric Patients Three Months to Less Than Eighteen Years Old With Infections Treated With Standard-of-care Antibiotics in the PEDI-CEFI Phase 2 Study.	John S Bradley, Elaine Orchiston, Simon Portsmouth, Mari Ariyasu, Takamichi Baba, Takayuki Katsube, Oluwaseun Makinde	The Pediatric Infectious Disease Journal	2024-09-04	Abstract
Human milk oligosaccharides are associated with maternal genetics and respiratory health of human milk-fed children.	Amirthagowri Ambalavanan, Le Chang, Jihoon Choi, Yang Zhang, Sara A Stickley, Zhi Y Fang, Kozeta Miliku, Bianca Robertson, Chloe Yonemitsu, Stuart E Turvey, Piushkumar J Mandhane, Elinor Simons, Theo J Moraes, Sonia S Anand, Guillaume Paré, Janet E Williams, Brenda M Murdoch, Gloria E Otoo, Samwel Mbugua, Elizabeth W Kamau-Mbuthia, Egidioh W Kamundia, Debela K Gindola, Juan M Rodriguez, Rossina G Pareja, Daniel W Sellen, Sophie E Moore, Andrew M Prentice, James A Foster, Linda J Kvist, Holly L Neibergs, Mark A McGuire, Michelle K McGuire, Courtney L Meehan, Malcolm R Sears, Padmaja Subbarao, Meghan B Azad, Lars Bode, Qingling Duan	Nature Communications	2024-09-04	Abstract
Spatial chemistry of citrus reveals molecules bactericidal to Candidatus Liberibacter asiaticus.	Alexander A Aksenov, Alex Blacutt, Nichole Ginnan, Philippe E Rolshausen, Alexey V Melnik, Ali Lotfi, Emily C Gentry, Manikandan Ramasamy, Cristal Zuniga, Karsten Zengler, Kranthi K Mandadi, Pieter C Dorrestein, M Caroline Roper	Scientific Reports	2024-09-02	Abstract
M proteins of group A Streptococcus bind hyaluronic acid via arginine-arginine/serine-arginine motifs.	Tahnee B-D McEwan, David M P De Oliveira, Emily K Stares, Lauren E Hartley-Tassell, Christopher J Day, Emma-Jayne Proctor, Victor Nizet, Mark J Walker, Michael P Jennings, Ronald Sluyter, Martina L Sanderson-Smith	FASEB Journal : Official Publication Of The Federation Of American Societies For Experimental Biology	2024-08-31	Abstract
Statistical Challenges When Analyzing SARS-CoV-2 RNA Measurements Below the Assay Limit of Quantification in COVID-19 Clinical Trials.	Carlee B Moser, Kara W Chew, Mark J Giganti, Jonathan Z Li, Evgenia Aga, Justin Ritz, Alexander L Greninger, Arzhang Cyrus Javan, Rachel Bender Ignacio, Eric S Daar, David A Wohl, Judith S Currier, Joseph J Eron, Davey M Smith, Michael D Hughes,	The Journal Of Infectious Diseases	2024-08-31	Abstract
Variant-Specific Viral Kinetics in Acute COVID-19.	Ruy M Ribeiro, Manish C Choudhary, Rinki Deo, Mark J Giganti, Carlee Moser, Justin Ritz, Alexander L Greninger, James Regan, James P Flynn, David A Wohl, Judith S Currier, Joseph J Eron, Michael D Hughes, Davey M Smith, Kara W Chew, Eric S Daar, Alan S Perelson, Jonathan Z Li,	The Journal Of Infectious Diseases	2024-08-31	Abstract
Immune Status and SARS-CoV-2 Viral Dynamics.	Yijia Li, Carlee Moser, Evgenia Aga, Judith S Currier, David A Wohl, Eric S Daar, Justin Ritz, Alexander L Greninger, Scott Sieg, Urvi M Parikh, Robert W Coombs, Michael D Hughes, Joseph J Eron, Davey M Smith, Kara W Chew, Jonathan Z Li,	The Journal Of Infectious Diseases	2024-08-31	Abstract
Association Between Anterior Nasal and Plasma SARS-CoV-2 RNA Levels and Hospitalization or Death in Nonhospitalized Adults With Mild-to-Moderate COVID-19.	Mark J Giganti, Kara W Chew, Joseph J Eron, Jonathan Z Li, Mauricio Pinilla, Carlee Moser, Arzhang Cyrus Javan, William A Fischer, Paul Klekotka, David Margolis, David Alain Wohl, Robert W Coombs, Eric S Daar, Davey M Smith, Judith S Currier, Michael D Hughes,	The Journal Of Infectious Diseases	2024-08-31	Abstract
Diagnosis and mitigation of the systemic impact of genome reduction in DGF-298.	Antoine Champie, Jean-Christophe Lachance, Anand Sastry, Dominick Matteau, Colton J Lloyd, Frédéric Grenier, Cameron R Lamoureux, Simon Jeanneau, Adam M Feist, Pierre-Étienne Jacques, Bernhard O Palsson, Sébastien Rodrigue	MBio	2024-08-29	Abstract
Host-associated microbes mitigate the negative impacts of aquatic pollution.	Rachel E Diner, Sarah M Allard, Jack A Gilbert	MSystems	2024-08-29	Abstract
CCL28 modulates neutrophil responses during infection with mucosal pathogens.	Gregory T Walker, Araceli Perez-Lopez, Steven Silva, Michael H Lee, Elisabet Bjånes, Nicholas Dillon, Stephanie L Brandt, Romana R Gerner, Karine Melchior, Grant J Norton, Felix A Argueta, Frenchesca Dela Pena, Lauren Park, Victor A Sosa-Hernandez, Rodrigo Cervantes-Diaz, Sandra Romero-Ramirez, Monica Cartelle Gestal, Jose L Maravillas-Montero, Sean-Paul Nuccio, Victor Nizet, Manuela Raffatellu	ELife	2024-08-28	Abstract
Simulation-driven design of stabilized SARS-CoV-2 spike S2 immunogens.	Xandra Nuqui, Lorenzo Casalino, Ling Zhou, Mohamed Shehata, Albert Wang, Alexandra L Tse, Anupam A Ojha, Fiona L Kearns, Mia A Rosenfeld, Emily Happy Miller, Cory M Acreman, Surl-Hee Ahn, Kartik Chandran, Jason S McLellan, Rommie E Amaro	Nature Communications	2024-08-27	Abstract
Maternal immune cell gene expression associates with maternal gut microbiome, milk composition and infant gut microbiome.	Manoj Gurung, Bharath Kumar Mulakala, Brent Thomas Schlegel, Dhivyaa Rajasundaram, Kartik Shankar, Lars Bode, Meghan L Ruebel, Clark Sims, Audrey Martinez, Aline Andres, Laxmi Yeruva	Clinical Nutrition ESPEN	2024-08-27	Abstract
Fecal gelatinase does not predict mortality in patients with alcohol-associated hepatitis.	Yongqiang Yang, Phillipp Hartmann, Bernd Schnabl	Microbial Cell (Graz, Austria)	2024-08-26	Abstract
Towards Understanding Tumour Colonisation by Probiotic Bacterium Nissle 1917.	Georgette A Radford, Laura Vrbanac, Rebekah T de Nys, Daniel L Worthley, Josephine A Wright, Jeff Hasty, Susan L Woods	Cancers	2024-08-26	Abstract
Human milk microbiota, oligosaccharide profiles, and infant gut microbiome in preterm infants diagnosed with necrotizing enterocolitis.	Andrea C Masi, Lauren C Beck, John D Perry, Claire L Granger, Alice Hiorns, Gregory R Young, Lars Bode, Nicholas D Embleton, Janet E Berrington, Christopher J Stewart	Cell Reports. Medicine	2024-08-23	Abstract
Impact of SARS-CoV-2 Resistance to Antiviral Monoclonal Antibody Therapy on Neutralizing Antibody Response.	Marc-Kendy Paul, Manish C Choudhary, Amy L Heaps, Rinki Deo, Daniela Moisi, Kelley C Gordon, John W Mellors, Carlee Moser, Paul Klekotka, Alan Landay, Judith S Currier, Joseph J Eron, Kara W Chew, Davey M Smith, Scott F Sieg, Urvi M Parikh, Jonathan Z Li,	Pathogens & Immunity	2024-08-21	Abstract
Modulating bacterial function utilizing A knowledge base of transcriptional regulatory modules.	Jongoh Shin, Daniel C Zielinski, Bernhard O Palsson	Nucleic Acids Research	2024-08-19	Abstract
Biosignature Molecules Accumulate and Persist in Evaporitic Brines: Implications for Planetary Exploration.	Chad Pozarycki, Kenneth M Seaton, Emily C Vincent, Carlie Novak Sanders, Nickie Nuñez, Mariah Castillo, Ellery Ingall, Benjamin Klempay, Alexandra Pontefract, Luke A Fisher, Emily R Paris, Steffen Buessecker, Nikolas B Alansson, Christopher E Carr, Peter T Doran, Jeff S Bowman, Britney E Schmidt, Amanda M Stockton	Astrobiology	2024-08-19	Abstract
A genome-scale metabolic model of a globally disseminated hyperinvasive M1 strain of .	Yujiro Hirose, Daniel C Zielinski, Saugat Poudel, Kevin Rychel, Jonathon L Baker, Yoshihiro Toya, Masaya Yamaguchi, Almut Heinken, Ines Thiele, Shigetada Kawabata, Bernhard O Palsson, Victor Nizet	MSystems	2024-08-19	Abstract
Effect of Topical Microencapsulated Benzoyl Peroxide on the Skin Microbiome in Rosacea: A Randomized, Double-Blind, Crossover, Vehicle-Controlled Clinical Trial.	Yvonne Nong, Jeffrey Sugarman, Jean Philippe York, Ofra Levy-Hacham, Dawnica Nadora, Rinat Mizrahi, Aidan Galati, Richard L Gallo, Raja K Sivamani	The Journal Of Clinical And Aesthetic Dermatology	2024-08-16	Abstract
Longitudinal assessment of the impact of COVID-19 infection on mask-wearing behaviors.	Danielle Pham, Angel Lomeli, Nicole H Goldhaber, Holly D Valentine, Rob Knight, Christopher A Longhurst, Louise C Laurent, Marni B Jacobs	BMC Public Health	2024-08-16	Abstract
Autism-associated CHD8 controls reactive gliosis and neuroinflammation via remodeling chromatin in astrocytes.	Platon Megagiannis, Yuan Mei, Rachel E Yan, Lin Yuan, Jonathan J Wilde, Hailey Eckersberg, Rahul Suresh, Xinzhu Tan, Hong Chen, W Todd Farmer, Kuwook Cha, Phuong Uyen Le, Helene Catoire, Daniel Rochefort, Tony Kwan, Brian A Yee, Patrick Dion, Arjun Krishnaswamy, Jean-Francois Cloutier, Stefano Stifani, Kevin Petrecca, Gene W Yeo, Keith K Murai, Guoping Feng, Guy A Rouleau, Trey Ideker, Neville E Sanjana, Yang Zhou	Cell Reports	2024-08-16	Abstract
Epidemiology of Pediatric Astrovirus Gastroenteritis in a Nicaraguan Birth Cohort.	Rebecca J Rubinstein, Lester Gutiérrez, Christian Toval-Ruíz, Kelli Hammond, Lars Bode, Jan Vinjé, Samuel Vilchez, Sylvia Becker-Dreps, Filemón Bucardo, Nadja A Vielot, Yaoska Reyes	Open Forum Infectious Diseases	2024-08-16	Abstract
Associations between gut microbiota and incident fractures in the FINRISK cohort.	Louise Grahnemo, Oleg Kambur, Leo Lahti, Pekka Jousilahti, Teemu Niiranen, Rob Knight, Veikko Salomaa, Aki S Havulinna, Claes Ohlsson	NPJ Biofilms And Microbiomes	2024-08-14	Abstract
The impact of breastfeeding on the preterm infant's microbiome and metabolome: a pilot study.	Keriann Schulkers Escalante, Shiyu S Bai-Tong, Sarah M Allard, Gertrude Ecklu-Mensah, Concepcion Sanchez, Se Jin Song, Jack Gilbert, Lars Bode, Pieter Dorrestein, Rob Knight, David J Gonzalez, Sydney A Leibel, Sandra L Leibel	Pediatric Research	2024-08-13	Abstract
Gut mycobiome alterations and implications for liver diseases.	Suling Zeng, Bernd Schnabl	PLoS Pathogens	2024-08-08	Abstract
Linoleoyl-lysophosphatidylcholine suppresses immune-related adverse events due to immune checkpoint blockade.	Ian T Mathews, Priyanka Saminathan, Mir Henglin, Mingyue Liu, Namratha Nadig, Camille Fang, Kysha Mercader, Serena J Chee, Allison M Campbell, Abhijit A Patel, Saumya Tiwari, Jeramie D Watrous, Karthik Ramesh, Martina Dicker, Khoi Dao, Melissa A Meyer, Pekka Jousilahti, Aki S Havulinna, Teemu Niiranen, Veikko Salomaa, Leo A B Joosten, Mihai G Netea, Pan Zheng, Mitchell Kronenberg, Sandip Pravin Patel, J Silvio Gutkind, Christian Ottensmeier, Tao Long, Susan M Kaech, Catherine C Hedrick, Susan Cheng, Mohit Jain, Sonia Sharma	MedRxiv : The Preprint Server For Health Sciences	2024-08-08	Abstract
The Central Roles of Keratinocytes in Coordinating Skin Immunity.	Jared Simmons, Richard L Gallo	The Journal Of Investigative Dermatology	2024-08-07	Abstract
Social and environmental predictors of gut microbiome age in wild baboons.	Mauna R Dasari, Kimberly E Roche, David Jansen, Jordan Anderson, Susan C Alberts, Jenny Tung, Jack A Gilbert, Ran Blekhman, Sayan Mukherjee, Elizabeth A Archie	BioRxiv : The Preprint Server For Biology	2024-08-04	Abstract
Phage resistance mutations affecting the bacterial cell surface increase susceptibility to fungi in a model cheese community.	Tara C J Spencer-Drakes, Angel Sarabia, Gary Heussler, Emily C Pierce, Manon Morin, Steven Villareal, Rachel J Dutton	ISME Communications	2024-08-02	Abstract
Immunological memory diversity in the human upper airway.	Sydney I Ramirez, Farhoud Faraji, L Benjamin Hills, Paul G Lopez, Benjamin Goodwin, Hannah D Stacey, Henry J Sutton, Kathryn M Hastie, Erica Ollmann Saphire, Hyun Jik Kim, Sara Mashoof, Carol H Yan, Adam S DeConde, Gina Levi, Shane Crotty	Nature	2024-07-31	Abstract
Complete sequencing of ape genomes.	DongAhn Yoo, Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A Logsdon, Steven J Solar, Dmitry Antipov, Brandon D Pickett, Yana Safonova, Francesco Montinaro, Yanting Luo, Joanna Malukiewicz, Jessica M Storer, Jiadong Lin, Abigail N Sequeira, Riley J Mangan, Glenn Hickey, Graciela Monfort Anez, Parithi Balachandran, Anton Bankevich, Christine R Beck, Arjun Biddanda, Matthew Borchers, Gerard G Bouffard, Emry Brannan, Shelise Y Brooks, Lucia Carbone, Laura Carrel, Agnes P Chan, Juyun Crawford, Mark Diekhans, Eric Engelbrecht, Cedric Feschotte, Giulio Formenti, Gage H Garcia, Luciana de Gennaro, David Gilbert, Richard E Green, Andrea Guarracino, Ishaan Gupta, Diana Haddad, Junmin Han, Robert S Harris, Gabrielle A Hartley, William T Harvey, Michael Hiller, Kendra Hoekzema, Marlys L Houck, Hyeonsoo Jeong, Kaivan Kamali, Manolis Kellis, Bryce Kille, Chul Lee, Youngho Lee, William Lees, Alexandra P Lewis, Qiuhui Li, Mark Loftus, Yong Hwee Eddie Loh, Hailey Loucks, Jian Ma, Yafei Mao, Juan F I Martinez, Patrick Masterson, Rajiv C McCoy, Barbara McGrath, Sean McKinney, Britta S Meyer, Karen H Miga, Saswat K Mohanty, Katherine M Munson, Karol Pal, Matt Pennell, Pavel A Pevzner, David Porubsky, Tamara Potapova, Francisca R Ringeling, Joana L Rocha, Oliver A Ryder, Samuel Sacco, Swati Saha, Takayo Sasaki, Michael C Schatz, Nicholas J Schork, Cole Shanks, Linnéa Smeds, Dongmin R Son, Cynthia Steiner, Alexander P Sweeten, Michael G Tassia, Françoise Thibaud-Nissen, Edmundo Torres-González, Mihir Trivedi, Wenjie Wei, Julie Wertz, Muyu Yang, Panpan Zhang, Shilong Zhang, Yang Zhang, Zhenmiao Zhang, Sarah A Zhao, Yixin Zhu, Erich D Jarvis, Jennifer L Gerton, Iker Rivas-González, Benedict Paten, Zachary A Szpiech, Christian D Huber, Tobias L Lenz, Miriam K Konkel, Soojin V Yi, Stefan Canzar, Corey T Watson, Peter H Sudmant, Erin Molloy, Erik Garrison, Craig B Lowe, Mario Ventura, Rachel J O'Neill, Sergey Koren, Kateryna D Makova, Adam M Phillippy, Evan E Eichler	BioRxiv : The Preprint Server For Biology	2024-07-31	Abstract
SkinCom, a synthetic skin microbial community, enables reproducible investigations of the human skin microbiome.	Asama Lekbua, Deepan Thiruppathy, Joanna Coker, Yuhan Weng, Fatemeh Askarian, Armin Kousha, Clarisse Marotz, Amber Hauw, Victor Nizet, Karsten Zengler	Cell Reports Methods	2024-07-30	Abstract
Gut-Microbiota-Related Metabolite Phenylacetylglutamine and Risk of Incident Coronary Heart Disease among Women.	Yoriko Heianza, Saumya Tiwari, Xuan Wang, Jeramie D Watrous, Kathryn M Rexrode, Frank B Hu, Mona Alotaibi, Mohit Jain, Qi Sun, JoAnn E Manson, Lu Qi	The Journal Of Clinical Endocrinology And Metabolism	2024-07-30	Abstract
Infant microbiota communities and HMO supplementation independently and synergistically shape metabolite production and immune responses in healthy mice.	Patricia Tripp, Erin C Davis, Manoj Gurung, Fernanda Rosa, Lars Bode, Renee Fox, Tanya LeRoith, Christy Simecka, Antti E Seppo, Kirsi M Järvinen, Laxmi Yeruva	The Journal Of Nutrition	2024-07-26	Abstract
Gene expression and chromatin conformation of microglia in virally suppressed people with HIV.	Johannes Cm Schlachetzki, Sara Gianella, Zhengyu Ouyang, Addison J Lana, Xiaoxu Yang, Sydney O'Brien, Jean F Challacombe, Peter J Gaskill, Kelly L Jordan-Sciutto, Antoine Chaillon, David Moore, Cristian L Achim, Ronald J Ellis, Davey M Smith, Christopher K Glass	Life Science Alliance	2024-07-26	Abstract
Gut Bacteria in Alcohol-Associated Liver Disease.	Yongqiang Yang, Bernd Schnabl	Clinics In Liver Disease	2024-07-24	Abstract
SARS-CoV-2 monoclonal antibody treatment followed by vaccination shifts human memory B cell epitope recognition suggesting antibody feedback.	Nathaniel Bloom, Sydney I Ramirez, Hallie Cohn, Urvi M Parikh, Amy Heaps, Scott F Sieg, Alex Greninger, Justin Ritz, Carlee Moser, Joseph J Eron, Goran Bajic, Judith S Currier, Paul Klekotka, David A Wohl, Eric S Daar, Jonathan Li, Michael D Hughes, Kara W Chew, Davey M Smith, Shane Crotty, Camila H Coelho,	The Journal Of Infectious Diseases	2024-07-22	Abstract
The indoors microbiome and human health.	Jack A Gilbert, Erica M Hartmann	Nature Reviews. Microbiology	2024-07-19	Abstract
Comparative efficacy of pharmacologic therapies for MASH in reducing liver fat content: Systematic review and network meta-analysis.	Benjamin Koh, Jieling Xiao, Cheng Han Ng, Michelle Law, Shyna Zhuoying Gunalan, Pojsakorn Danpanichkul, Vijay Ramadoss, Benedix Kuan Loon Sim, En Ying Tan, Chong Boon Teo, Benjamin Nah, Margaret Teng, Karn Wijarnpreecha, Yuya Seko, Mei Chin Lim, Hirokazu Takahashi, Atsushi Nakajima, Mazen Noureddin, Mark Muthiah, Daniel Q Huang, Rohit Loomba	Hepatology (Baltimore, Md.)	2024-07-19	Abstract
A therapy for suppressing canonical and noncanonical SARS-CoV-2 viral entry and an intrinsic intrapulmonary inflammatory response.	Sandra L Leibel, Rachael N McVicar, Rabi Murad, Elizabeth M Kwong, Alex E Clark, Asuka Alvarado, Bethany A Grimmig, Ruslan Nuryyev, Randee E Young, Jamie C Lee, Weiqi Peng, Yanfang P Zhu, Eric Griffis, Cameron J Nowell, Brian James, Suzie Alarcon, Atul Malhotra, Linden J Gearing, Paul J Hertzog, Cheska M Galapate, Koen M O Galenkamp, Cosimo Commisso, Davey M Smith, Xin Sun, Aaron F Carlin, Richard L Sidman, Ben A Croker, Evan Y Snyder	Proceedings Of The National Academy Of Sciences Of The United States Of America	2024-07-19	Abstract
House dust metagenome and pulmonary function in a US farming population.	Mikyeong Lee, Abhishek Kaul, James M Ward, Qiyun Zhu, Marie Richards, Ziyue Wang, Antonio González, Christine G Parks, Laura E Beane Freeman, David M Umbach, Alison A Motsinger-Reif, Rob Knight, Stephanie J London	Microbiome	2024-07-18	Abstract
Severe Acute Respiratory Syndrome Coronavirus 2 Plasma Antibody and Nucleocapsid Antigen Status Predict Outcomes in Outpatients With Coronavirus Disease 2019.	Nikolaus Jilg, Mark J Giganti, Kara W Chew, Katy Shaw-Saliba, Justin Ritz, Carlee Moser, Teresa H Evering, Eric S Daar, Joseph J Eron, Judith S Currier, Michael D Hughes, H Cliff Lane, Robin Dewar, Davey M Smith, Jonathan Z Li	Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America	2024-07-17	Abstract
Mixotrophic growth of a ubiquitous marine diatom.	Manish Kumar, Juan D Tibocha-Bonilla, Zoltán Füssy, Chloe Lieng, Sarah M Schwenck, Alice V Levesque, Mahmoud M Al-Bassam, Anurag Passi, Maxwell Neal, Cristal Zuniga, Farrah Kaiyom, Josh L Espinoza, Hyungyu Lim, Shawn W Polson, Lisa Zeigler Allen, Karsten Zengler	Science Advances	2024-07-17	Abstract
How bile acids and the microbiota interact to shape host immunity.	Michael H Lee, Sean-Paul Nuccio, Ipsita Mohanty, Lee R Hagey, Pieter C Dorrestein, Hiutung Chu, Manuela Raffatellu	Nature Reviews. Immunology	2024-07-15	Abstract
Human microglial cells as a therapeutic target in a neurodevelopmental disease model.	Pinar Mesci, Christopher N LaRock, Jacob J Jeziorski, Hideyuki Nakashima, Natalia Chermont, Adriano Ferrasa, Roberto H Herai, Tomoka Ozaki, Aurian Saleh, Cedric E Snethlage, Sandra Sanchez, Gabriela Goldberg, Cleber A Trujillo, Kinichi Nakashima, Victor Nizet, Alysson R Muotri	Stem Cell Reports	2024-07-13	Abstract
Priming antibody responses to the fusion peptide in rhesus macaques.	Christopher A Cottrell, Payal P Pratap, Kimberly M Cirelli, Diane G Carnathan, Chiamaka A Enemuo, Aleksandar Antanasijevic, Gabriel Ozorowski, Leigh M Sewall, Hongmei Gao, Joel D Allen, Bartek Nogal, Murillo Silva, Jinal Bhiman, Matthias Pauthner, Darrell J Irvine, David Montefiori, Max Crispin, Dennis R Burton, Guido Silvestri, Shane Crotty, Andrew B Ward	NPJ Vaccines	2024-07-12	Abstract
Bacteriophage Φ21's receptor-binding protein evolves new functions through destabilizing mutations that generate non-genetic phenotypic heterogeneity.	Krista R Gerbino, Joshua M Borin, Sarah M Ardell, Justin J Lee, Kevin D Corbett, Justin R Meyer	Virus Evolution	2024-07-11	Abstract
Dietary Iron Intake Has Long-Term Effects on the Fecal Metabolome and Microbiome.	Anastasiia Kostenko, Simone Zuffa, Hui Zhi, Kevin Mildau, Manuela Raffatellu, Pieter C Dorrestein, Allegra T Aron	Metallomics : Integrated Biometal Science	2024-07-11	Abstract
Application of Novel Biomarkers in MASLD: Precision Medicine Based Approach.	Nimish Thakral, Hailemichael Desalegn, Luis Antonio Diaz, Daniel Cabrera, Rohit Loomba, Marco Arrese, Juan Pablo Arab	Seminars In Liver Disease	2024-07-11	Abstract
RIG-I-like receptor DRH-1 signals via CARDs to activate antiviral immunity in intestinal cells.	Lakshmi E Batachari, Alyssa Y Dai, Emily R Troemel	Proceedings Of The National Academy Of Sciences Of The United States Of America	2024-07-09	Abstract
Impact of diet change on the gut microbiome of common marmosets ().	Cassandra Tang-Wing, Ipsita Mohanty, MacKenzie Bryant, Katherine Makowski, Daira Melendez, Pieter C Dorrestein, Rob Knight, Andrés Mauricio Caraballo-Rodríguez, Celeste Allaband, Keith Jenné	MSystems	2024-07-08	Abstract
Global prevalence, clinical characteristics, surveillance, treatment allocation, and outcomes of alcohol-associated hepatocellular carcinoma.	Rebecca Wenling Zeng, Christen En Ya Ong, Elden Yen Hng Ong, Charlotte Hui Chung, Wen Hui Lim, Jieling Xiao, Pojsakorn Danpanichkul, Jia Hao Law, Nicholas Syn, Douglas Chee, Alfred Wei Chieh Kow, Sung Won Lee, Hirokazu Takahashi, Takumi Kawaguchi, Nobuharu Tamaki, Yock Young Dan, Atsushi Nakajima, Karn Wijarnpreecha, Mark D Muthiah, Mazen Noureddin, Rohit Loomba, George N Ioannou, Darren Jun Hao Tan, Cheng Han Ng, Daniel Q Huang	Clinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association	2024-07-08	Abstract
Integrative genomic reconstruction of carbohydrate utilization networks in bifidobacteria: global trends, local variability, and dietary adaptation.	Aleksandr A Arzamasov, Dmitry A Rodionov, Matthew C Hibberd, Janaki L Guruge, Marat D Kazanov, Semen A Leyn, James E Kent, Kristija Sejane, Lars Bode, Michael J Barratt, Jeffrey I Gordon, Andrei L Osterman	BioRxiv : The Preprint Server For Biology	2024-07-07	Abstract
Orsay Virus Infection in Caenorhabditis elegans.	Lakshmi E Batachari, Mario Bardan Sarmiento, Nicole Wernet, Emily R Troemel	Current Protocols	2024-07-05	Abstract
More evolvable bacteriophages better suppress their host.	Elijah K Horwitz, Hannah M Strobel, Jason Haiso, Justin R Meyer	Evolutionary Applications	2024-07-04	Abstract
An intron endonuclease facilitates interference competition between coinfecting viruses.	Erica A Birkholz, Chase J Morgan, Thomas G Laughlin, Rebecca K Lau, Amy Prichard, Sahana Rangarajan, Gabrielle N Meza, Jina Lee, Emily Armbruster, Sergey Suslov, Kit Pogliano, Justin R Meyer, Elizabeth Villa, Kevin D Corbett, Joe Pogliano	Science (New York, N.Y.)	2024-07-04	Abstract
Feasibility of Home Collection for Urogenital Microbiome Samples.	Emily S Lukacz, Cynthia S Fok, MacKenzie Bryant, Dulce P Rodriguez-Ponciano, Melanie R Meister, Margaret G Mueller, Cora E Lewis, Jerry L Lowder, Ariana L Smith, Ann Stapleton, Amy Ayala, Ratna Pakpahan, Sarah Hortsch, Daniel McDonald, Sara Putnam, Kyle Rudser, Se Jin Song, Rob Knight, Linda Brubaker,	Urogynecology (Philadelphia, Pa.)	2024-07-03	Abstract
PI3Kγ inhibition circumvents inflammation and vascular leak in SARS-CoV-2 and other infections.	Ryan M Shepard, Anghesom Ghebremedhin, Isaraphorn Pratumchai, Sally R Robinson, Courtney Betts, Jingjing Hu, Roman Sasik, Kathleen M Fisch, Jaroslav Zak, Hui Chen, Marc Paradise, Jason Rivera, Mohammad Amjad, Satoshi Uchiyama, Hideya Seo, Alejandro D Campos, Denise Ann Dayao, Saul Tzipori, Cesar Piedra-Mora, Soumita Das, Farnaz Hasteh, Hana Russo, Xin Sun, Le Xu, Laura Crotty E Alexander, Jason M Duran, Mazen Odish, Victor Pretorius, Nell C Kirchberger, Shao-Ming Chin, Tami Von Schalscha, David Cheresh, John D Morrey, Rossitza Alargova, Brenda O'Connell, Theodore A Martinot, Sandip P Patel, Victor Nizet, Amanda J Martinot, Lisa M Coussens, John R Teijaro, Judith A Varner	Science Translational Medicine	2024-07-03	Abstract
An efficient -inducible CRISPR interference system for group A genetic analysis and pathogenesis studies.	Elisabet Bjånes, Alexandra Stream, Axel B Janssen, Paddy S Gibson, Afonso M Bravo, Samira Dahesh, Jonathon L Baker, Andrew Varble, Victor Nizet, Jan-Willem Veening	MBio	2024-07-02	Abstract
Time of sample collection is critical for the replicability of microbiome analyses.	Celeste Allaband, Amulya Lingaraju, Stephany Flores Ramos, Tanya Kumar, Haniyeh Javaheri, Maria D Tiu, Ana Carolina Dantas Machado, R Alexander Richter, Emmanuel Elijah, Gabriel G Haddad, Vanessa A Leone, Pieter C Dorrestein, Rob Knight, Amir Zarrinpar	Nature Metabolism	2024-07-01	Abstract
Serum and CSF metabolomics analysis shows Mediterranean Ketogenic Diet mitigates risk factors of Alzheimer's disease.	Annalise Schweickart, Richa Batra, Bryan J Neth, Cameron Martino, Liat Shenhav, Anru R Zhang, Pixu Shi, Naama Karu, Kevin Huynh, Peter J Meikle, Leyla Schimmel, Amanda Hazel Dilmore, Kaj Blennow, Henrik Zetterberg, Colette Blach, Pieter C Dorrestein, Rob Knight, , Suzanne Craft, Rima Kaddurah-Daouk, Jan Krumsiek	NPJ Metabolic Health And Disease	2024-07-01	Abstract
Microbial solutions must be deployed against climate catastrophe.	Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert	FEMS Microbiology Ecology	2024-06-27	Abstract
Pangenome comparison of genomospecies unveils genetic diversity and ecological insights.	Renee E Oles, Marvic Carrillo Terrazas, Luke R Loomis, Chia-Yun Hsu, Caitlin Tribelhorn, Pedro Belda-Ferre, Allison C Ea, MacKenzie Bryant, Jocelyn A Young, Hannah C Carrow, William J Sandborn, Parambir S Dulai, Mamata Sivagnanam, David Pride, Rob Knight, Hiutung Chu	MSystems	2024-06-27	Abstract
Host ecotype and rearing environment are the main drivers of threespine stickleback gut microbiota diversity in a naturalistic experiment.	Andreas Härer, Christine J Frazier, Diana J Rennison	Royal Society Open Science	2024-06-26	Abstract
Retraction Note: Microbiome analyses of blood and tissues suggest cancer diagnostic approach.	Gregory D Poore, Evguenia Kopylova, Qiyun Zhu, Carolina Carpenter, Serena Fraraccio, Stephen Wandro, Tomasz Kosciolek, Stefan Janssen, Jessica Metcalf, Se Jin Song, Jad Kanbar, Sandrine Miller-Montgomery, Robert Heaton, Rana Mckay, Sandip Pravin Patel, Austin D Swafford, Rob Knight	Nature	2024-06-26	Abstract
Leptochelins A-C, Cytotoxic Metallophores Produced by Geographically Dispersed Strains of Marine Cyanobacteria.	Nicole E Avalon, Mariana A Reis, Christopher C Thornburg, R Thomas Williamson, Daniel Petras, Allegra T Aron, George F Neuhaus, Momen Al-Hindy, Jana Mitrevska, Leonor Ferreira, João Morais, Yasin El Abiead, Evgenia Glukhov, Kelsey L Alexander, F Alexandra Vulpanovici, Matthew J Bertin, Syrena Whitner, Hyukjae Choi, Gabriella Spengler, Kirill Blinov, Ameen M Almohammadi, Lamiaa A Shaala, William R Kew, Ljiljana Paša-Tolić, Diaa T A Youssef, Pieter C Dorrestein, Vitor Vasconcelos, Lena Gerwick, Kerry L McPhail, William H Gerwick	Journal Of The American Chemical Society	2024-06-25	Abstract
Strain-specific gut microbial signatures in type 2 diabetes identified in a cross-cohort analysis of 8,117 metagenomes.	Zhendong Mei, Fenglei Wang, Amrisha Bhosle, Danyue Dong, Raaj Mehta, Andrew Ghazi, Yancong Zhang, Yuxi Liu, Ehud Rinott, Siyuan Ma, Eric B Rimm, Martha Daviglus, Walter C Willett, Rob Knight, Frank B Hu, Qibin Qi, Andrew T Chan, Robert D Burk, Meir J Stampfer, Iris Shai, Robert C Kaplan, Curtis Huttenhower, Dong D Wang	Nature Medicine	2024-06-25	Abstract
Synthetic lethality and the minimal genome size problem.	Sara Rahiminejad, Bianca De Sanctis, Pavel Pevzner, Arcady Mushegian	MSphere	2024-06-21	Abstract
Proteome allocation is linked to transcriptional regulation through a modularized transcriptome.	Arjun Patel, Dominic McGrosso, Ying Hefner, Anaamika Campeau, Anand V Sastry, Svetlana Maurya, Kevin Rychel, David J Gonzalez, Bernhard O Palsson	Nature Communications	2024-06-19	Abstract
Small molecule in situ resin capture provides a compound first approach to natural product discovery.	Alexander Bogdanov, Mariam N Salib, Alexander B Chase, Heinz Hammerlindl, Mitchell N Muskat, Stephanie Luedtke, Elany Barbosa da Silva, Anthony J O'Donoghue, Lani F Wu, Steven J Altschuler, Tadeusz F Molinski, Paul R Jensen	Nature Communications	2024-06-19	Abstract
Dietary Acculturation Is Associated With Altered Gut Microbiome, Circulating Metabolites, and Cardiovascular Disease Risk in US Hispanics and Latinos: Results From HCHS/SOL.	Yi Wang, Guo-Chong Chen, Zheng Wang, Kai Luo, Yanbo Zhang, Yang Li, Amanda C McClain, Marta M Jankowska, Krista M Perreira, Josiemer Mattei, Carmen R Isasi, Maria M Llabre, Bharat Thyagarajan, Martha L Daviglus, Linda Van Horn, David Goldsztajn Farelo, Luis E Maldonado, Steven R Levine, Bing Yu, Eric Boerwinkle, Rob Knight, Robert D Burk, Robert C Kaplan, Qibin Qi, Brandilyn A Peters	Circulation	2024-06-19	Abstract
Engineering plasmid copy number heterogeneity for dynamic microbial adaptation.	Shalni Kumar, Andrew Lezia, Jeff Hasty	Nature Microbiology	2024-06-18	Abstract
In vitro evolution and whole genome analysis to study chemotherapy drug resistance in haploid human cells.	Juan Carlos Jado, Michelle Dow, Krypton Carolino, Adam Klie, Gregory J Fonseca, Trey Ideker, Hannah Carter, Elizabeth A Winzeler	Scientific Reports	2024-06-18	Abstract
Author Correction: Vaccination induces broadly neutralizing antibody precursors to HIV gp41.	Torben Schiffner, Ivy Phung, Rashmi Ray, Adriana Irimia, Ming Tian, Olivia Swanson, Jeong Hyun Lee, Chang-Chun D Lee, Ester Marina-Zárate, So Yeon Cho, Jiachen Huang, Gabriel Ozorowski, Patrick D Skog, Andreia M Serra, Kimmo Rantalainen, Joel D Allen, Sabyasachi Baboo, Oscar L Rodriguez, Sunny Himansu, Jianfu Zhou, Jonathan Hurtado, Claudia T Flynn, Katherine McKenney, Colin Havenar-Daughton, Swati Saha, Kaitlyn Shields, Steven Schultze, Melissa L Smith, Chi-Hui Liang, Laura Toy, Simone Pecetta, Ying-Cing Lin, Jordan R Willis, Fabian Sesterhenn, Daniel W Kulp, Xiaozhen Hu, Christopher A Cottrell, Xiaoya Zhou, Jennifer Ruiz, Xuesong Wang, Usha Nair, Kathrin H Kirsch, Hwei-Ling Cheng, Jillian Davis, Oleksandr Kalyuzhniy, Alessia Liguori, Jolene K Diedrich, Julia T Ngo, Vanessa Lewis, Nicole Phelps, Ryan D Tingle, Skye Spencer, Erik Georgeson, Yumiko Adachi, Michael Kubitz, Saman Eskandarzadeh, Marc A Elsliger, Rama R Amara, Elise Landais, Bryan Briney, Dennis R Burton, Diane G Carnathan, Guido Silvestri, Corey T Watson, John R Yates, James C Paulson, Max Crispin, Gevorg Grigoryan, Andrew B Ward, Devin Sok, Frederick W Alt, Ian A Wilson, Facundo D Batista, Shane Crotty, William R Schief	Nature Immunology	2024-06-14	Abstract
The Natural History of Post-Chikungunya Viral Arthritis Disease Activity and T-cell Immunology: A Cohort Study.	Aileen Yu-Hen Chang, Alfonso Sucerquia Hernández, Jose Forero Mejía, Sarah Renee Tritsch, Evelyn Mendoza-Torres, Liliana Encinales, Andres Cadena Bonfanti, Abigale Marie Proctor, Gary Leonard Simon, Samuel Joseph Simmens, Gary Steven Firestein	Journal Of Cellular Immunology	2024-06-14	Abstract
Scaling DEPP phylogenetic placement to ultra-large reference trees: a tree-aware ensemble approach.	Yueyu Jiang, Daniel McDonald, Daniela Perry, Rob Knight, Siavash Mirarab	Bioinformatics (Oxford, England)	2024-06-13	Abstract
Conservation of C4BP-binding sequence patterns in Streptococcus pyogenes M and Enn proteins.	Piotr Kolesiński, Matthew McGowan, Anne Botteaux, Pierre R Smeesters, Partho Ghosh	The Journal Of Biological Chemistry	2024-06-13	Abstract
Exploring the genetics of lithium response in bipolar disorders.	Marisol Herrera-Rivero, Mazda Adli, Kazufumi Akiyama, Nirmala Akula, Azmeraw T Amare, Raffaella Ardau, Bárbara Arias, Jean-Michel Aubry, Lena Backlund, Frank Bellivier, Antonio Benabarre, Susanne Bengesser, Abesh Kumar Bhattacharjee, Joanna M Biernacka, Armin Birner, Micah Cearns, Pablo Cervantes, Hsi-Chung Chen, Caterina Chillotti, Sven Cichon, Scott R Clark, Francesc Colom, Cristiana Cruceanu, Piotr M Czerski, Nina Dalkner, Franziska Degenhardt, Maria Del Zompo, J Raymond DePaulo, Bruno Etain, Peter Falkai, Ewa Ferensztajn-Rochowiak, Andreas J Forstner, Josef Frank, Louise Frisén, Mark A Frye, Janice M Fullerton, Carla Gallo, Sébastien Gard, Julie S Garnham, Fernando S Goes, Maria Grigoroiu-Serbanescu, Paul Grof, Ryota Hashimoto, Roland Hasler, Joanna Hauser, Urs Heilbronner, Stefan Herms, Per Hoffmann, Liping Hou, Yi-Hsiang Hsu, Stephane Jamain, Esther Jiménez, Jean-Pierre Kahn, Layla Kassem, Tadafumi Kato, John Kelsoe, Sarah Kittel-Schneider, Po-Hsiu Kuo, Ichiro Kusumi, Barbara König, Gonzalo Laje, Mikael Landén, Catharina Lavebratt, Marion Leboyer, Susan G Leckband, Mario Maj, Mirko Manchia, Cynthia Marie-Claire, Lina Martinsson, Michael J McCarthy, Susan L McElroy, Vincent Millischer, Marina Mitjans, Francis M Mondimore, Palmiero Monteleone, Caroline M Nievergelt, Tomas Novák, Markus M Nöthen, Claire O'Donovan, Norio Ozaki, Sergi Papiol, Andrea Pfennig, Claudia Pisanu, James B Potash, Andreas Reif, Eva Reininghaus, Hélène Richard-Lepouriel, Gloria Roberts, Guy A Rouleau, Janusz K Rybakowski, Martin Schalling, Peter R Schofield, Klaus Oliver Schubert, Eva C Schulte, Barbara W Schweizer, Giovanni Severino, Tatyana Shekhtman, Paul D Shilling, Katzutaka Shimoda, Christian Simhandl, Claire M Slaney, Alessio Squassina, Thomas Stamm, Pavla Stopkova, Fabian Streit, Fasil Tekola-Ayele, Anbupalam Thalamuthu, Alfonso Tortorella, Gustavo Turecki, Julia Veeh, Eduard Vieta, Biju Viswanath, Stephanie H Witt, Peter P Zandi, Martin Alda, Michael Bauer, Francis J McMahon, Philip B Mitchell, Marcella Rietschel, Thomas G Schulze, Bernhard T Baune	International Journal Of Bipolar Disorders	2024-06-12	Abstract
Clonal associations between lymphocyte subsets and functional states in rheumatoid arthritis synovium.	Garrett Dunlap, Aaron Wagner, Nida Meednu, Ruoqiao Wang, Fan Zhang, Jabea Cyril Ekabe, Anna Helena Jonsson, Kevin Wei, Saori Sakaue, Aparna Nathan, , Vivian P Bykerk, Laura T Donlin, Susan M Goodman, Gary S Firestein, David L Boyle, V Michael Holers, Larry W Moreland, Darren Tabechian, Costantino Pitzalis, Andrew Filer, Soumya Raychaudhuri, Michael B Brenner, Juilee Thakar, Andrew McDavid, Deepak A Rao, Jennifer H Anolik	Nature Communications	2024-06-11	Abstract
A simple rule for predicting function of microbial communities.	Sergey Kryazhimskiy	Cell	2024-06-08	Abstract
Effects of intensive lifestyle changes on the progression of mild cognitive impairment or early dementia due to Alzheimer's disease: a randomized, controlled clinical trial.	Dean Ornish, Catherine Madison, Miia Kivipelto, Colleen Kemp, Charles E McCulloch, Douglas Galasko, Jon Artz, Dorene Rentz, Jue Lin, Kim Norman, Anne Ornish, Sarah Tranter, Nancy DeLamarter, Noel Wingers, Carra Richling, Rima Kaddurah-Daouk, Rob Knight, Daniel McDonald, Lucas Patel, Eric Verdin, Rudolph E Tanzi, Steven E Arnold	Alzheimer's Research & Therapy	2024-06-07	Abstract
Association between butyrate-producing gut bacteria and the risk of infectious disease hospitalisation: results from two observational, population-based microbiome studies.	Robert F J Kullberg, Irina Wikki, Bastiaan W Haak, Anni Kauko, Henrike Galenkamp, Hessel Peters-Sengers, Joe M Butler, Aki S Havulinna, Joonatan Palmu, Daniel McDonald, Chouaib Benchraka, Mahmoud I Abdel-Aziz, Maria Prins, Anke H Maitland van der Zee, Bert-Jan van den Born, Pekka Jousilahti, Willem M de Vos, Veikko Salomaa, Rob Knight, Leo Lahti, Max Nieuwdorp, Teemu Niiranen, W Joost Wiersinga	The Lancet. Microbe	2024-06-07	Abstract
A Prebiotic Diet Containing Galactooligosaccharides and Polydextrose Produces Dynamic and Reproducible Changes in the Gut Microbial Ecosystem in Male Rats.	Robert S Thompson, Samuel J Bowers, Fernando Vargas, Shelby Hopkins, Tel Kelley, Antonio Gonzalez, Christopher A Lowry, Pieter C Dorrestein, Martha Hotz Vitaterna, Fred W Turek, Rob Knight, Kenneth P Wright, Monika Fleshner	Nutrients	2024-06-06	Abstract
A treasure trove of 1034 actinomycete genomes.	Tue Sparholt Jørgensen, Omkar S Mohite, Eva B Sterndorff, Maria Alvarez-Arevalo, Kai Blin, Thomas J Booth, Pep Charusanti, David Faurdal, Troels Ø Hansen, Matin Nuhamunada, Anna-Sophie Mourched, Bernhard Ø Palsson, Tilmann Weber	Nucleic Acids Research	2024-06-04	Abstract
The hallmarks of a tradeoff in transcriptomes that balances stress and growth functions.	Christopher Dalldorf, Kevin Rychel, Richard Szubin, Ying Hefner, Arjun Patel, Daniel C Zielinski, Bernhard O Palsson	MSystems	2024-06-03	Abstract
Endogenous ethanol production in health and disease.	Abraham S Meijnikman, Max Nieuwdorp, Bernd Schnabl	Nature Reviews. Gastroenterology & Hepatology	2024-06-03	Abstract
Outcomes of SARS-CoV-2 and seasonal viruses among 2 million adults hospitalized for severe acute respiratory infection during the COVID-19 pandemic in Brazil.	Lilian M Diniz, Cristiane S Dias, Maria Christina L Oliveira, Ana Cristina Simões E Silva, Enrico A Colosimo, Robert H Mak, Clara C Pinhati, Stella C Galante, Isadora O Yan, Hercílio Martelli-Júnior, Eduardo A Oliveira	The Journal Of Infectious Diseases	2024-05-31	Abstract
Exploring roles of the chitinase ChiC in modulating virulence phenotypes.	Per Kristian Thorén Edvardsen, Fatemeh Askarian, Raymond Zurich, Victor Nizet, Gustav Vaaje-Kolstad	Microbiology Spectrum	2024-05-31	Abstract
Deciphering nutritional stress responses via knowledge-enriched transcriptomics for microbial engineering.	Jongoh Shin, Daniel C Zielinski, Bernhard O Palsson	Metabolic Engineering	2024-05-31	Abstract
Affinity gaps among B cells in germinal centers drive the selection of MPER precursors.	Rashmi Ray, Torben Schiffner, Xuesong Wang, Yu Yan, Kimmo Rantalainen, Chang-Chun David Lee, Shivang Parikh, Raphael A Reyes, Gordon A Dale, Ying-Cing Lin, Simone Pecetta, Sophie Giguere, Olivia Swanson, Sven Kratochvil, Eleonora Melzi, Ivy Phung, Lisa Madungwe, Oleksandr Kalyuzhniy, John Warner, Stephanie R Weldon, Ryan Tingle, Edward Lamperti, Kathrin H Kirsch, Nicole Phelps, Erik Georgeson, Yumiko Adachi, Michael Kubitz, Usha Nair, Shane Crotty, Ian A Wilson, William R Schief, Facundo D Batista	Nature Immunology	2024-05-30	Abstract
Vaccination induces broadly neutralizing antibody precursors to HIV gp41.	Torben Schiffner, Ivy Phung, Rashmi Ray, Adriana Irimia, Ming Tian, Olivia Swanson, Jeong Hyun Lee, Chang-Chun D Lee, Ester Marina-Zárate, So Yeon Cho, Jiachen Huang, Gabriel Ozorowski, Patrick D Skog, Andreia M Serra, Kimmo Rantalainen, Joel D Allen, Sabyasachi Baboo, Oscar L Rodriguez, Sunny Himansu, Jianfu Zhou, Jonathan Hurtado, Claudia T Flynn, Katherine McKenney, Colin Havenar-Daughton, Swati Saha, Kaitlyn Shields, Steven Schulze, Melissa L Smith, Chi-Hui Liang, Laura Toy, Simone Pecetta, Ying-Cing Lin, Jordan R Willis, Fabian Sesterhenn, Daniel W Kulp, Xiaozhen Hu, Christopher A Cottrell, Xiaoya Zhou, Jennifer Ruiz, Xuesong Wang, Usha Nair, Kathrin H Kirsch, Hwei-Ling Cheng, Jillian Davis, Oleksandr Kalyuzhniy, Alessia Liguori, Jolene K Diedrich, Julia T Ngo, Vanessa Lewis, Nicole Phelps, Ryan D Tingle, Skye Spencer, Erik Georgeson, Yumiko Adachi, Michael Kubitz, Saman Eskandarzadeh, Marc A Elsliger, Rama R Amara, Elise Landais, Bryan Briney, Dennis R Burton, Diane G Carnathan, Guido Silvestri, Corey T Watson, John R Yates, James C Paulson, Max Crispin, Gevorg Grigoryan, Andrew B Ward, Devin Sok, Frederick W Alt, Ian A Wilson, Facundo D Batista, Shane Crotty, William R Schief	Nature Immunology	2024-05-30	Abstract
Microbiologist in the Clinic: Postmenopausal Woman with Chronic OAB and Positive Urine Culture.	Linda Brubaker, Harry Horsley, Rajvinder Khasriya, Alan J Wolfe	International Urogynecology Journal	2024-05-27	Abstract
Comparative Metabolomics and Microbiome Analysis of Ethanol versus OMNImet/gene•GUT Fecal Stabilization.	Heidi Isokääntä, Lucas Pinto da Silva, Naama Karu, Teemu Kallonen, Anna-Katariina Aatsinki, Thomas Hankemeier, Leyla Schimmel, Edgar Diaz, Tuulia Hyötyläinen, Pieter C Dorrestein, Rob Knight, Matej Orešič, Rima Kaddurah-Daouk, Alex M Dickens, Santosh Lamichhane	Analytical Chemistry	2024-05-23	Abstract
Environmental metabolomics characterization of modern stromatolites and annotation of ibhayipeptolides.	George F Neuhaus, Allegra T Aron, Eric W Isemonger, Daniel Petras, Samantha C Waterworth, Luthando S Madonsela, Emily C Gentry, Xavier Siwe Noundou, Jarmo-Charles J Kalinski, Alexandros Polyzois, Julius C Habiyaremye, Margaret A Redick, Jason C Kwan, Rosemary A Dorrington, Pieter C Dorrestein, Kerry L McPhail	PloS One	2024-05-23	Abstract
SARS-CoV-2 breakthrough infections enhance T cell response magnitude, breadth, and epitope repertoire.	Alison Tarke, Parham Ramezani-Rad, Tertuliano Alves Pereira Neto, Yeji Lee, Vanessa Silva-Moraes, Benjamin Goodwin, Nathaniel Bloom, Leila Siddiqui, Liliana Avalos, April Frazier, Zeli Zhang, Ricardo da Silva Antunes, Jennifer Dan, Shane Crotty, Alba Grifoni, Alessandro Sette	Cell Reports. Medicine	2024-05-22	Abstract
The Prospect of Biomimetic Immune Cell Membrane-Coated Nanomedicines for Treatment of Serious Bacterial Infections and Sepsis.	Alexandria Hoffman, Victor Nizet	The Journal Of Pharmacology And Experimental Therapeutics	2024-05-21	Abstract
Aquatic processing enhances the loss of aged carbon from drained and burned peatlands.	Jennifer C Bowen, Alison M Hoyt, Xiaomei Xu, Muhammad Nuriman, Gusti Z Anshari, Putri Juliandini Wahyudio, Lihini I Aluwihare	Global Change Biology	2024-05-21	Abstract
Vaccine priming of rare HIV broadly neutralizing antibody precursors in nonhuman primates.	Jon M Steichen, Ivy Phung, Eugenia Salcedo, Gabriel Ozorowski, Jordan R Willis, Sabyasachi Baboo, Alessia Liguori, Christopher A Cottrell, Jonathan L Torres, Patrick J Madden, Krystal M Ma, Henry J Sutton, Jeong Hyun Lee, Oleksandr Kalyuzhniy, Joel D Allen, Oscar L Rodriguez, Yumiko Adachi, Tina-Marie Mullen, Erik Georgeson, Michael Kubitz, Alison Burns, Shawn Barman, Rohini Mopuri, Amanda Metz, Tasha K Altheide, Jolene K Diedrich, Swati Saha, Kaitlyn Shields, Steven E Schultze, Melissa L Smith, Torben Schiffner, Dennis R Burton, Corey T Watson, Steven E Bosinger, Max Crispin, John R Yates, James C Paulson, Andrew B Ward, Devin Sok, Shane Crotty, William R Schief	Science (New York, N.Y.)	2024-05-17	Abstract
Associations of plant-based foods, red and processed meat, and dairy with gut microbiome in Finnish adults.	Mirkka Maukonen, Kari K Koponen, Aki S Havulinna, Niina E Kaartinen, Teemu Niiranen, Guillaume Méric, Anne-Maria Pajari, Rob Knight, Veikko Salomaa, Satu Männistö	European Journal Of Nutrition	2024-05-16	Abstract
Integrating clinical research into electronic health record workflows to support a learning health system.	Nicole H Goldhaber, Marni B Jacobs, Louise C Laurent, Rob Knight, Wenhong Zhu, Dean Pham, Allen Tran, Sandip P Patel, Michael Hogarth, Christopher A Longhurst	JAMIA Open	2024-05-15	Abstract
Unveiling ecological/evolutionary insights in HIV viral load dynamics: Allowing random slopes to observe correlational changes to CpG-contents and other molecular and clinical predictors.	Rocío Carrasco-Hernández, Humberto Valenzuela-Ponce, Maribel Soto-Nava, Claudia García-Morales, Margarita Matías-Florentino, Joel O Wertheim, Davey M Smith, Gustavo Reyes-Terán, Santiago Ávila-Ríos	Epidemics	2024-05-14	Abstract
The Urinary Microbiome: Improving Diagnostics and Management of Urinary Tract Infections in Adult Females.	Toby C Chai, Alan J Wolfe, Linda Brubaker	Infectious Disease Clinics Of North America	2024-05-11	Abstract
Gut microbiota, blood metabolites, and left ventricular diastolic dysfunction in US Hispanics/Latinos.	Kai Luo, Alkis Taryn, Eun-Hye Moon, Brandilyn A Peters, Scott D Solomon, Martha L Daviglus, Mayank M Kansal, Bharat Thyagarajan, Marc D Gellman, Jianwen Cai, Robert D Burk, Rob Knight, Robert C Kaplan, Susan Cheng, Carlos J Rodriguez, Qibin Qi, Bing Yu	Microbiome	2024-05-10	Abstract
Neutrophil Extracellular Traps (NETs): An Emerging Therapeutic Target to Improve Infectious Diseases Outcomes.	Angela Meier, George Sakoulas, Victor Nizet, Erlinda R Ulloa	The Journal Of Infectious Diseases	2024-05-10	Abstract
Temporal and spatial diversity and abundance of cryptophytes in San Diego coastal waters.	Tristin Rammel, Maitreyi Nagarkar, Brian Palenik	Journal Of Phycology	2024-05-09	Abstract
The workshops on computational applications in secondary metabolite discovery (CAiSMD).	Fidele Ntie-Kang, Donatus B Eni, Kiran K Telukunta, Victor Chukwudi Osamor, Samuel A Egieyeh, Miquel Duran-Frigola, Pankaj Mishra, Daniel M Shadrack, Lucas Paul, Thommas M Musyoka, Kai Blin, Mai M Farid, Ya Chen, Lucie Karelle Djogang, Jude Y Betow, Akachukwu Ibezim, Darshana Joshi, Alanis T Edwin, Mary A Chama, Jean Moto Ongagna, Pierre Valery Kemdoum Sinda, Jonathan A Metuge, Boris D Bekono, Mustafa A Isa, José L Medina-Franco, Tilmann Weber, Pieter C Dorrestein, Dusanka Janezic, Özlem Tastan Bishop, Jutta Ludwig-Müller	Physical Sciences Reviews	2024-05-08	Abstract
SRX3177, a CDK4/6-PI3K-BET inhibitor, in combination with an RdRp inhibitor, Molnupiravir, or an entry inhibitor MU-UNMC-2, has potent antiviral activity against the Omicron variant of SARS-CoV-2.	Kabita Pandey, Arpan Acharya, Dhananjaya Pal, Prashant Jain, Kamal Singh, Donald L Durden, Tatiana G Kutateladze, Aniruddha J Deshpande, Siddappa N Byrareddy	Antiviral Research	2024-05-08	Abstract
Researching COVID to enhance recovery (RECOVER) pediatric study protocol: Rationale, objectives and design.	Rachel S Gross, Tanayott Thaweethai, Erika B Rosenzweig, James Chan, Lori B Chibnik, Mine S Cicek, Amy J Elliott, Valerie J Flaherman, Andrea S Foulkes, Margot Gage Witvliet, Richard Gallagher, Maria Laura Gennaro, Terry L Jernigan, Elizabeth W Karlson, Stuart D Katz, Patricia A Kinser, Lawrence C Kleinman, Michelle F Lamendola-Essel, Joshua D Milner, Sindhu Mohandas, Praveen C Mudumbi, Jane W Newburger, Kyung E Rhee, Amy L Salisbury, Jessica N Snowden, Cheryl R Stein, Melissa S Stockwell, Kelan G Tantisira, Moriah E Thomason, Dongngan T Truong, David Warburton, John C Wood, Shifa Ahmed, Almary Akerlundh, Akram N Alshawabkeh, Brett R Anderson, Judy L Aschner, Andrew M Atz, Robin L Aupperle, Fiona C Baker, Venkataraman Balaraman, Dithi Banerjee, Deanna M Barch, Arielle Baskin-Sommers, Sultana Bhuiyan, Marie-Abele C Bind, Amanda L Bogie, Tamara Bradford, Natalie C Buchbinder, Elliott Bueler, Hülya Bükülmez, B J Casey, Linda Chang, Maryanne Chrisant, Duncan B Clark, Rebecca G Clifton, Katharine N Clouser, Lesley Cottrell, Kelly Cowan, Viren D'Sa, Mirella Dapretto, Soham Dasgupta, Walter Dehority, Audrey Dionne, Kirsten B Dummer, Matthew D Elias, Shari Esquenazi-Karonika, Danielle N Evans, E Vincent S Faustino, Alexander G Fiks, Daniel Forsha, John J Foxe, Naomi P Friedman, Greta Fry, Sunanda Gaur, Dylan G Gee, Kevin M Gray, Stephanie Handler, Ashraf S Harahsheh, Keren Hasbani, Andrew C Heath, Camden Hebson, Mary M Heitzeg, Christina M Hester, Sophia Hill, Laura Hobart-Porter, Travis K F Hong, Carol R Horowitz, Daniel S Hsia, Matthew Huentelman, Kathy D Hummel, Katherine Irby, Joanna Jacobus, Vanessa L Jacoby, Pei-Ni Jone, David C Kaelber, Tyler J Kasmarcak, Matthew J Kluko, Jessica S Kosut, Angela R Laird, Jeremy Landeo-Gutierrez, Sean M Lang, Christine L Larson, Peter Paul C Lim, Krista M Lisdahl, Brian W McCrindle, Russell J McCulloh, Kimberly McHugh, Alan L Mendelsohn, Torri D Metz, Julie Miller, Elizabeth C Mitchell, Lerraughn M Morgan, Eva M Müller-Oehring, Erica R Nahin, Michael C Neale, Manette Ness-Cochinwala, Sheila M Nolan, Carlos R Oliveira, Onyekachukwu Osakwe, Matthew E Oster, R Mark Payne, Michael A Portman, Hengameh Raissy, Isabelle G Randall, Suchitra Rao, Harrison T Reeder, Johana M Rosas, Mark W Russell, Arash A Sabati, Yamuna Sanil, Alice I Sato, Michael S Schechter, Rangaraj Selvarangan, S Kristen Sexson Tejtel, Divya Shakti, Kavita Sharma, Lindsay M Squeglia, Shubika Srivastava, Michelle D Stevenson, Jacqueline Szmuszkovicz, Maria M Talavera-Barber, Ronald J Teufel, Deepika Thacker, Felicia Trachtenberg, Mmekom M Udosen, Megan R Warner, Sara E Watson, Alan Werzberger, Jordan C Weyer, Marion J Wood, H Shonna Yin, William T Zempsky, Emily Zimmerman, Benard P Dreyer,	PloS One	2024-05-07	Abstract
Generation of 'semi-guided' cortical organoids with complex neural oscillations.	Michael Q Fitzgerald, Tiffany Chu, Francesca Puppo, Rebeca Blanch, Miguel Chillón, Shankar Subramaniam, Alysson R Muotri	Nature Protocols	2024-05-03	Abstract
Universal digital high-resolution melting for the detection of pulmonary mold infections.	Tyler Goshia, April Aralar, Nathan Wiederhold, Jeffrey D Jenks, Sanjay R Mehta, Aprajita Karmakar, Monish E S, Ankit Sharma, Haoxiang Sun, Refilwe Kebadireng, P Lewis White, Mridu Sinha, Martin Hoenigl, Stephanie I Fraley	Journal Of Clinical Microbiology	2024-05-02	Abstract
An essential and highly selective protein import pathway encoded by nucleus-forming phage.	Chase J Morgan, Eray Enustun, Emily G Armbruster, Erica A Birkholz, Amy Prichard, Taylor Forman, Ann Aindow, Wichanan Wannasrichan, Sela Peters, Koe Inlow, Isabelle L Shepherd, Alma Razavilar, Vorrapon Chaikeeratisak, Benjamin A Adler, Brady F Cress, Jennifer A Doudna, Kit Pogliano, Elizabeth Villa, Kevin D Corbett, Joe Pogliano	Proceedings Of The National Academy Of Sciences Of The United States Of America	2024-04-30	Abstract
Engineered bacterial therapeutics for detecting and treating CRC.	Nicole Siguenza, Arianna Brevi, Joanna T Zhang, Arman Pabani, Abhinav Bhushan, Moumita Das, Yousong Ding, Jeff Hasty, Pradipta Ghosh, Amir Zarrinpar	Trends In Cancer	2024-04-30	Abstract
Variability and bias in microbiome metagenomic sequencing: an interlaboratory study comparing experimental protocols.	Samuel P Forry, Stephanie L Servetas, Jason G Kralj, Keng Soh, Michalis Hadjithomas, Raul Cano, Martha Carlin, Maria G de Amorim, Benjamin Auch, Matthew G Bakker, Thais F Bartelli, Juan P Bustamante, Ignacio Cassol, Mauricio Chalita, Emmanuel Dias-Neto, Aaron Del Duca, Daryl M Gohl, Jekaterina Kazantseva, Muyideen T Haruna, Peter Menzel, Bruno S Moda, Lorieza Neuberger-Castillo, Diana N Nunes, Isha R Patel, Rodrigo D Peralta, Adrien Saliou, Rolf Schwarzer, Samantha Sevilla, Isabella K T M Takenaka, Jeremy R Wang, Rob Knight, Dirk Gevers, Scott A Jackson	Scientific Reports	2024-04-29	Abstract
The Effect of Retinoic Acid on Neutrophil Innate Immune Interactions With Cutaneous Bacterial Pathogens.	Alexandra Stream, Ross Corriden, Simon Döhrmann, Richard L Gallo, Victor Nizet, Ericka L Anderson	Infectious Microbes & Diseases	2024-04-29	Abstract
Exploring the role of neuronal-enriched extracellular vesicle miR-93 and interoception in major depressive disorder.	Kaiping Burrows, Leandra K Figueroa-Hall, Jennifer L Stewart, Ahlam M Alarbi, Rayus Kuplicki, Bethany N Hannafon, Chibing Tan, Victoria B Risbrough, Brett A McKinney, Rajagopal Ramesh, Teresa A Victor, Robin Aupperle, Jonathan Savitz, T Kent Teague, Sahib S Khalsa, Martin P Paulus	Translational Psychiatry	2024-04-27	Abstract
Distinguishing Molecular Properties of OAT, OATP, and MRP Drug Substrates by Machine Learning.	Anisha K Nigam, Jeremiah D Momper, Anupam Anand Ojha, Sanjay K Nigam	Pharmaceutics	2024-04-26	Abstract
Disparities in Metabolic Syndrome and Neurocognitive Function Among Older Hispanics/Latinos with Human Immunodeficiency Virus.	María J Marquine, Lily Kamalyan, Zvinka Z Zlatar, David Yassai-Gonzalez, Alán Perez-Tejada, Anya Umlauf, Tala Al-Rousan, Verónica González, Jordana Breton, Lesley A Guareña, Lilla Brody, Mariana Cherner, Ronald J Ellis, Maria Luisa Zúñiga, Dan M Mungas, Raeanne C Moore, David J Moore, Valerie Wojna, Rasheeda K Hall, Donald R Franklin, Robert K Heaton	AIDS Patient Care And STDs	2024-04-25	Abstract
Metabolic and inflammatory perturbation of diabetes associated gut dysbiosis in people living with and without HIV infection.	Kai Luo, Brandilyn A Peters, Jee-Young Moon, Xiaonan Xue, Zheng Wang, Mykhaylo Usyk, David B Hanna, Alan L Landay, Michael F Schneider, Deborah Gustafson, Kathleen M Weber, Audrey French, Anjali Sharma, Kathryn Anastos, Tao Wang, Todd Brown, Clary B Clish, Robert C Kaplan, Rob Knight, Robert D Burk, Qibin Qi	Genome Medicine	2024-04-20	Abstract
Modeling the emergence of viral resistance for SARS-CoV-2 during treatment with an anti-spike monoclonal antibody.	Tin Phan, Carolin Zitzmann, Kara W Chew, Davey M Smith, Eric S Daar, David A Wohl, Joseph J Eron, Judith S Currier, Michael D Hughes, Manish C Choudhary, Rinki Deo, Jonathan Z Li, Ruy M Ribeiro, Ruian Ke, Alan S Perelson,	PLoS Pathogens	2024-04-18	Abstract
Iron limitation of heterotrophic bacteria in the California current system tracks relative availability of organic carbon and iron.	Lauren E Manck, Tyler H Coale, Brandon M Stephens, Kiefer O Forsch, Lihini I Aluwihare, Christopher L Dupont, Andrew E Allen, Katherine A Barbeau	The ISME Journal	2024-04-16	Abstract
Serial adaptive laboratory evolution enhances mixed carbon metabolic capacity of Escherichia coli.	Kangsan Kim, Donghui Choe, Minjeong Kang, Sang-Hyeok Cho, Suhyung Cho, Ki Jun Jeong, Bernhard Palsson, Byung-Kwan Cho	Metabolic Engineering	2024-04-16	Abstract
Improving microbial phylogeny with citizen science within a mass-market video game.	Roman Sarrazin-Gendron, Parham Ghasemloo Gheidari, Alexander Butyaev, Timothy Keding, Eddie Cai, Jiayue Zheng, Renata Mutalova, Julien Mounthanyvong, Yuxue Zhu, Elena Nazarova, Chrisostomos Drogaris, Kornél Erhart, , , Amélie Brouillette, Gabriel Richard, Randy Pitchford, Sébastien Caisse, Mathieu Blanchette, Daniel McDonald, Rob Knight, Attila Szantner, Jérôme Waldispühl	Nature Biotechnology	2024-04-15	Abstract
Understanding the risks of co-exposures in a changing world: a case study of dual monitoring of the biotoxin domoic acid and Vibrio spp. in Pacific oyster.	Alle A Y Lie, Amity G Zimmer-Faust, Rachel E Diner, Emily Kunselman, Zachary Daniel, Kathryn Van Artsdalen, Mariana C Salas Garcia, Jack A Gilbert, Dana Shultz, Jeff Chokry, Kylie Langlois, Jayme Smith	Environmental Monitoring And Assessment	2024-04-12	Abstract
Where do the pathogens that cause surgical site infections come from?	Jack A Gilbert, John Alverdy	Science Translational Medicine	2024-04-10	Abstract
Dermal injury drives a skin to gut axis that disrupts the intestinal microbiome and intestinal immune homeostasis in mice.	Tatsuya Dokoshi, Yang Chen, Kellen J Cavagnero, Gibraan Rahman, Daniel Hakim, Samantha Brinton, Hana Schwarz, Elizabeth A Brown, Alan O'Neill, Yoshiyuki Nakamura, Fengwu Li, Nita H Salzman, Rob Knight, Richard L Gallo	Nature Communications	2024-04-08	Abstract
Correction: Robustness of cancer microbiome signals over a broad range of methodological variation.	Gregory D Sepich-Poore, Daniel McDonald, Evguenia Kopylova, Caitlin Guccione, Qiyun Zhu, George Austin, Carolina Carpenter, Serena Fraraccio, Stephen Wandro, Tomasz Kosciolek, Stefan Janssen, Jessica L Metcalf, Se Jin Song, Jad Kanbar, Sandrine Miller-Montgomery, Robert Heaton, Rana Mckay, Sandip Pravin Patel, Austin D Swafford, Tal Korem, Rob Knight	Oncogene	2024-04-05	Abstract
Occult hepatitis B virus infection and current perspectives on global WHO 2030 eradication.	Shanmugam Saravanan, Esaki M Shankar, Ramachandran Vignesh, Pitchaipillai Sankar Ganesh, Sathish Sankar, Vijayakumar Velu, Davey M Smith, Pachamuthu Balakrishnan, Dhivya Viswanathan, Rajakumar Govindasamy, Arcot R Venkateswaran	Journal Of Viral Hepatitis	2024-04-05	Abstract
The changing metabolic landscape of bile acids - keys to metabolism and immune regulation.	Ipsita Mohanty, Celeste Allaband, Helena Mannochio-Russo, Yasin El Abiead, Lee R Hagey, Rob Knight, Pieter C Dorrestein	Nature Reviews. Gastroenterology & Hepatology	2024-04-04	Abstract
A phenome-wide association and Mendelian randomisation study of alcohol use variants in a diverse cohort comprising over 3 million individuals.	Mariela V Jennings, José Jaime Martínez-Magaña, Natasia S Courchesne-Krak, Renata B Cupertino, Laura Vilar-Ribó, Sevim B Bianchi, Alexander S Hatoum, Elizabeth G Atkinson, Paola Giusti-Rodriguez, Janitza L Montalvo-Ortiz, Joel Gelernter, María Soler Artigas, , Sarah L Elson, Howard J Edenberg, Pierre Fontanillas, Abraham A Palmer, Sandra Sanchez-Roige	EBioMedicine	2024-04-02	Abstract
IL-22-dependent responses and their role during infection.	Karine Melchior, Romana R Gerner, Suzana Hossain, Sean-Paul Nuccio, Cristiano Gallina Moreira, Manuela Raffatellu	Infection And Immunity	2024-04-01	Abstract
Gut Microbiota and Blood Metabolites Related to Fiber Intake and Type 2 Diabetes.	Zheng Wang, Brandilyn A Peters, Bing Yu, Megan L Grove, Tao Wang, Xiaonan Xue, Bharat Thyagarajan, Martha L Daviglus, Eric Boerwinkle, Gang Hu, Yasmin Mossavar-Rahmani, Carmen R Isasi, Rob Knight, Robert D Burk, Robert C Kaplan, Qibin Qi	Circulation Research	2024-03-28	Abstract
Enrichable consortia of microbial symbionts degrade macroalgal polysaccharides in fish.	Aaron Oliver, Sheila Podell, Linda Wegley Kelly, Wesley J Sparagon, Alvaro M Plominsky, Robert S Nelson, Lieve M L Laurens, Simona Augyte, Neil A Sims, Craig E Nelson, Eric E Allen	MBio	2024-03-27	Abstract
Microbiota from human infants consuming secretors or non-secretors mothers' milk impacts the gut and immune system in mice.	Manoj Gurung, Brent Thomas Schlegel, Dhivyaa Rajasundaram, Renee Fox, Lars Bode, Tianming Yao, Stephen R Lindemann, Tanya LeRoith, Quentin D Read, Christy Simecka, Laura Carroll, Aline Andres, Laxmi Yeruva	MSystems	2024-03-26	Abstract
A simple solid media assay for detection of synergy between bacteriophages and antibiotics.	Ethan Khong, Joseph J Oh, Julian M Jimenez, Roland Liu, Sage Dunham, Alisha Monsibais, Alison Rhoads, Pooja Ghatbale, Andrew Garcia, Ana Georgina Cobián Güemes, Alisha N Blanc, Megan Chiu, Peiting Kuo, Marissa Proost, Ahnika Kline, Saima Aslam, Robert T Schooley, Katrine Whiteson, Stephanie I Fraley, David T Pride	Microbiology Spectrum	2024-03-25	Abstract
Integration of polygenic and gut metagenomic risk prediction for common diseases.	Yang Liu, Scott C Ritchie, Shu Mei Teo, Matti O Ruuskanen, Oleg Kambur, Qiyun Zhu, Jon Sanders, Yoshiki Vázquez-Baeza, Karin Verspoor, Pekka Jousilahti, Leo Lahti, Teemu Niiranen, Veikko Salomaa, Aki S Havulinna, Rob Knight, Guillaume Méric, Michael Inouye	Nature Aging	2024-03-25	Abstract
Inflammatory Dietary Potential Is Associated with Vitamin Depletion and Gut Microbial Dysbiosis in Early Pregnancy.	Suzanne A Alvernaz, Elizabeth S Wenzel, Unnathi Nagelli, Lacey B Pezley, Bazil LaBomascus, Jack A Gilbert, Pauline M Maki, Lisa Tussing-Humphreys, Beatriz Peñalver Bernabé	Nutrients	2024-03-24	Abstract
Review article: New developments in biomarkers and clinical drug development in alpha-1 antitrypsin deficiency-related liver disease.	Rohit Loomba, Ginger Clark, Jeff Teckman, Veeral Ajmera, Cynthia Behling, Mark Brantly, David Brenner, Jeanine D'Armiento, Michael W Fried, Janani S Iyer, Mattias Mandorfer, Don C Rockey, Monica Tincopa, Raj Vuppalanchi, Zobair Younossi, Aleksander Krag, Alice M Turner, Pavel Strnad	Alimentary Pharmacology & Therapeutics	2024-03-22	Abstract
Peripheral neuronal activation shapes the microbiome and alters gut physiology.	Jessica A Griffiths, Bryan B Yoo, Peter Thuy-Boun, Victor J Cantu, Kelly C Weldon, Collin Challis, Michael J Sweredoski, Ken Y Chan, Taren M Thron, Gil Sharon, Annie Moradian, Gregory Humphrey, Qiyun Zhu, Justin P Shaffer, Dennis W Wolan, Pieter C Dorrestein, Rob Knight, Viviana Gradinaru, Sarkis K Mazmanian	Cell Reports	2024-03-21	Abstract
Safety and Efficacy of SAB-185 for Nonhospitalized Adults With COVID-19: A Randomized Clinical Trial.	Kara W Chew, Babafemi O Taiwo, Carlee Moser, Eric S Daar, David Alain Wohl, Justin Ritz, Arzhang Cyrus Javan, Jonathan Z Li, William Fischer, Alexander L Greninger, Christoph Bausch, Thomas Luke, Robert Call, Gene Neytman, Mark J Giganti, Courtney V Fletcher, Michael D Hughes, Joseph J Eron, Judith S Currier, Davey M Smith,	The Journal Of Infectious Diseases	2024-03-19	Abstract
Characterization of Treatment Resistance and Viral Kinetics in the Setting of Single-Active Versus Dual-Active Monoclonal Antibodies Against Severe Acute Respiratory Syndrome Coronavirus 2.	Manish C Choudhary, Rinki Deo, Teresa H Evering, Kara W Chew, Mark J Giganti, Carlee Moser, Justin Ritz, James Regan, James P Flynn, Charles R Crain, David Alain Wohl, Judith S Currier, Joseph J Eron, David Margolis, Qing Zhu, Lijie Zhon, Li Ya, Alexander L Greninger, Michael D Hughes, Davey Smith, Eric S Daar, Jonathan Z Li	The Journal Of Infectious Diseases	2024-03-15	Abstract
Advancing the scale of synthetic biology via cross-species transfer of cellular functions enabled by iModulon engraftment.	Donghui Choe, Connor A Olson, Richard Szubin, Hannah Yang, Jaemin Sung, Adam M Feist, Bernhard O Palsson	Nature Communications	2024-03-15	Abstract
Study protocol: Project 2VIDA! SARS-CoV-2 vaccine intervention delivery for adults in Southern California.	Britt Skaathun, Linda Salgin, Fatima A Muñoz, Gregory A Talavera, Davey M Smith, Jamila K Stockman, Sophie E O'Bryan, Daniel Ramirez, Cynthia James-Price, Argentina E Servin	Frontiers In Public Health	2024-03-14	Abstract
Whole-body metabolic modelling reveals microbiome and genomic interactions on reduced urine formate levels in Alzheimer's disease.	Filippo Martinelli, Almut Heinken, Ann-Kristin Henning, Maria A Ulmer, Tim Hensen, Antonio González, Matthias Arnold, Sanjay Asthana, Kathrin Budde, Corinne D Engelman, Mehrbod Estaki, Hans-Jörgen Grabe, Margo B Heston, Sterling Johnson, Gabi Kastenmüller, Cameron Martino, Daniel McDonald, Federico E Rey, Ingo Kilimann, Olive Peters, Xiao Wang, Eike Jakob Spruth, Anja Schneider, Klaus Fliessbach, Jens Wiltfang, Niels Hansen, Wenzel Glanz, Katharina Buerger, Daniel Janowitz, Christoph Laske, Matthias H Munk, Annika Spottke, Nina Roy, Matthias Nauck, Stefan Teipel, Rob Knight, Rima F Kaddurah-Daouk, Barbara B Bendlin, Johannes Hertel, Ines Thiele	Scientific Reports	2024-03-13	Abstract
Genome-wide association study identifies 30 obsessive-compulsive disorder associated loci.	Nora I Strom, Zachary F Gerring, Marco Galimberti, Dongmei Yu, Matthew W Halvorsen, Abdel Abdellaoui, Cristina Rodriguez-Fontenla, Julia M Sealock, Tim Bigdeli, Jonathan R Coleman, Behrang Mahjani, Jackson G Thorp, Katharina Bey, Christie L Burton, Jurjen J Luykx, Gwyneth Zai, Silvia Alemany, Christine Andre, Kathleen D Askland, Nerisa Banaj, Cristina Barlassina, Judith Becker Nissen, O Joseph Bienvenu, Donald Black, Michael H Bloch, Julia Boberg, Sigrid Børte, Rosa Bosch, Michael Breen, Brian P Brennan, Helena Brentani, Joseph D Buxbaum, Jonas Bybjerg-Grauholm, Enda M Byrne, Judit Cabana-Dominguez, Beatriz Camarena, Adrian Camarena, Carolina Cappi, Angel Carracedo, Miguel Casas, Maria Cristina Cavallini, Valentina Ciullo, Edwin H Cook, Jesse Crosby, Bernadette A Cullen, Elles J De Schipper, Richard Delorme, Srdjan Djurovic, Jason A Elias, Xavier Estivill, Martha J Falkenstein, Bengt T Fundin, Lauryn Garner, Chris German, Christina Gironda, Fernando S Goes, Marco A Grados, Jakob Grove, Wei Guo, Jan Haavik, Kristen Hagen, Kelly Harrington, Alexandra Havdahl, Kira D Höffler, Ana G Hounie, Donald Hucks, Christina Hultman, Magdalena Janecka, Eric Jenike, Elinor K Karlsson, Kara Kelley, Julia Klawohn, Janice E Krasnow, Kristi Krebs, Christoph Lange, Nuria Lanzagorta, Daniel Levey, Kerstin Lindblad-Toh, Fabio Macciardi, Brion Maher, Brittany Mathes, Evonne McArthur, Nathaniel McGregor, Nicole C McLaughlin, Sandra Meier, Euripedes C Miguel, Maureen Mulhern, Paul S Nestadt, Erika L Nurmi, Kevin S O'Connell, Lisa Osiecki, Olga Therese Ousdal, Teemu Palviainen, Nancy L Pedersen, Fabrizio Piras, Federica Piras, Sriramya Potluri, Raquel Rabionet, Alfredo Ramirez, Scott Rauch, Abraham Reichenberg, Mark A Riddle, Stephan Ripke, Maria C Rosário, Aline S Sampaio, Miriam A Schiele, Anne Heidi Skogholt, Laura G Sloofman G Sloofman, Jan Smit, Artigas María Soler, Laurent F Thomas, Eric Tifft, Homero Vallada, Nathanial van Kirk, Jeremy Veenstra-VanderWeele, Nienke N Vulink, Christopher P Walker, Ying Wang, Jens R Wendland, Bendik S Winsvold, Yin Yao, Hang Zhou, , , , , , Arpana Agrawal, Pino Alonso, Götz Berberich, Kathleen K Bucholz, Cynthia M Bulik, Danielle Cath, Damiaan Denys, Valsamma Eapen, Howard Edenberg, Peter Falkai, Thomas V Fernandez, Abby J Fyer, J M Gaziano, Dan A Geller, Hans J Grabe, Benjamin D Greenberg, Gregory L Hanna, Ian B Hickie, David M Hougaard, Norbert Kathmann, James Kennedy, Dongbing Lai, Mikael Landén, Stéphanie Le Hellard, Marion Leboyer, Christine Lochner, James T McCracken, Sarah E Medland, Preben B Mortensen, Benjamin M Neale, Humberto Nicolini, Merete Nordentoft, Michele Pato, Carlos Pato, David L Pauls, John Piacentini, Christopher Pittenger, Danielle Posthuma, Josep Antoni Ramos-Quiroga, Steven A Rasmussen, Margaret A Richter, David R Rosenberg, Stephan Ruhrmann, Jack F Samuels, Sven Sandin, Paul Sandor, Gianfranco Spalletta, Dan J Stein, S Evelyn Stewart, Eric A Storch, Barbara E Stranger, Maurizio Turiel, Thomas Werge, Ole A Andreassen, Anders D Børglum, Susanne Walitza, Kristian Hveem, Bjarne K Hansen, Christian P Rück, Nicholas G Martin, Lili Milani, Ole Mors, Ted Reichborn-Kjennerud, Marta Ribasés, Gerd Kvale, David Mataix-Cols, Katharina Domschke, Edna Grünblatt, Michael Wagner, John-Anker Zwart, Gerome Breen, Gerald Nestadt, Jaakko Kaprio, Paul D Arnold, Dorothy E Grice, James A Knowles, Helga Ask, Karin J Verweij, Lea K Davis, Dirk J Smit, James J Crowley, Jeremiah M Scharf, Murray B Stein, Joel Gelernter, Carol A Mathews, Eske M Derks, Manuel Mattheisen	MedRxiv : The Preprint Server For Health Sciences	2024-03-13	Abstract
Discovery of Latent Cannabichromene Cyclase Activity in Marine Bacterial Flavoenzymes.	Anna C Love, Trevor N Purdy, Felix M Hubert, Ella J Kirwan, Darren C Holland, Bradley S Moore	ACS Synthetic Biology	2024-03-08	Abstract
Conjugation to Native and Nonnative Triscatecholate Siderophores Enhances Delivery and Antibacterial Activity of a β-Lactam to Gram-Negative Bacterial Pathogens.	Rachel N Motz, Chuchu Guo, Artur Sargun, Gregory T Walker, Martina Sassone-Corsi, Manuela Raffatellu, Elizabeth M Nolan	Journal Of The American Chemical Society	2024-03-08	Abstract
TRIF-IFN-I pathway in -induced gastric cancer in an accelerated murine disease model and patient biopsies.	Prerna Bali, Ivonne Lozano-Pope, Jonathan Hernandez, Monica V Estrada, Maripat Corr, Michael A Turner, Michael Bouvet, Christopher Benner, Marygorret Obonyo	IScience	2024-03-08	Abstract
The underappreciated diversity of bile acid modifications.	Ipsita Mohanty, Helena Mannochio-Russo, Joshua V Schweer, Yasin El Abiead, Wout Bittremieux, Shipei Xing, Robin Schmid, Simone Zuffa, Felipe Vasquez, Valentina B Muti, Jasmine Zemlin, Omar E Tovar-Herrera, Sarah Moraïs, Dhimant Desai, Shantu Amin, Imhoi Koo, Christoph W Turck, Itzhak Mizrahi, Penny M Kris-Etherton, Kristina S Petersen, Jennifer A Fleming, Tao Huan, Andrew D Patterson, Dionicio Siegel, Lee R Hagey, Mingxun Wang, Allegra T Aron, Pieter C Dorrestein	Cell	2024-03-06	Abstract
Microbial community composition predicts bacterial production across ocean ecosystems.	Elizabeth Connors, Avishek Dutta, Rebecca Trinh, Natalia Erazo, Srishti Dasarathy, Hugh Ducklow, J L Weissman, Yi-Chun Yeh, Oscar Schofield, Deborah Steinberg, Jed Fuhrman, Jeff S Bowman	The ISME Journal	2024-03-05	Abstract
Longitudinal analysis of CSF HIV RNA in untreated people with HIV: Identification of CSF controllers.	Mattia Trunfio, Bin Tang, Oluwakemi Okwuegbuna, Jennifer E Iudicello, Ajay Bharti, David J Moore, Benjamin B Gelman, Susan Morgello, Payal B Patel, Leah H Rubin, Beau M Ances, Sara Gianella, Robert K Heaton, Ronald J Ellis, Scott L Letendre	Journal Of Medical Virology	2024-03-05	Abstract
Methods for the discovery and characterization of octocoral terpene cyclases.	Immo Burkhardt, Lara Dürr, Natalie E Grayson, Bradley S Moore	Methods In Enzymology	2024-03-05	Abstract
CRISPR-aided genome engineering for secondary metabolite biosynthesis in Streptomyces.	Yongjae Lee, Soonkyu Hwang, Woori Kim, Ji Hun Kim, Bernhard O Palsson, Byung-Kwan Cho	Journal Of Industrial Microbiology & Biotechnology	2024-03-04	Abstract
Bacterial diversity and chemical ecology of natural product-producing bacteria from Great Salt Lake sediment.	Elijah R Bring Horvath, William J Brazelton, Min Cheol Kim, Reiko Cullum, Matthew A Mulvey, William Fenical, Jaclyn M Winter	ISME Communications	2024-03-04	Abstract
Transforming Big Data into AI-ready data for nutrition and obesity research.	Diana M Thomas, Rob Knight, Jack A Gilbert, Marilyn C Cornelis, Marie G Gantz, Kate Burdekin, Kevin Cummiskey, Susan C J Sumner, Wimal Pathmasiri, Edward Sazonov, Kelley Pettee Gabriel, Erin E Dooley, Mark A Green, Andrew Pfluger, Samantha Kleinberg	Obesity (Silver Spring, Md.)	2024-03-01	Abstract
Author Correction: Advances and prospects for the Human BioMolecular Atlas Program (HuBMAP).	Sanjay Jain, Liming Pei, Jeffrey M Spraggins, Michael Angelo, James P Carson, Nils Gehlenborg, Fiona Ginty, Joana P Gonçalves, James S Hagood, John W Hickey, Neil L Kelleher, Louise C Laurent, Shin Lin, Yiing Lin, Huiping Liu, Alexandra Naba, Ernesto S Nakayasu, Wei-Jun Qian, Andrea Radtke, Paul Robson, Brent R Stockwell, Raf Van de Plas, Ioannis S Vlachos, Mowei Zhou, , Katy Börner, Michael P Snyder	Nature Cell Biology	2024-03-01	Abstract
Harnessing the Power Within: Engineering the Microbiome for Enhanced Gynecologic Health.	Caitriona Brennan, Kristina Chan, Tanya Kumar, Erica Maissy, Linda Brubaker, Marisol I Dothard, Jack A Gilbert, Katharine E Gilbert, Amanda L Lewis, Varykina Thackray, Amir Zarrinpar, Rob Knight	Reproduction & Fertility	2024-03-01	Abstract
Staphylococcus aureus: The Bug Behind the Itch in Atopic Dermatitis.	Richard L Gallo, Alexander R Horswill	The Journal Of Investigative Dermatology	2024-02-29	Abstract
Author Correction: Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.	Youwen Qin, Aki S Havulinna, Yang Liu, Pekka Jousilahti, Scott C Ritchie, Alex Tokolyi, Jon G Sanders, Liisa Valsta, Marta Brożyńska, Qiyun Zhu, Anupriya Tripathi, Yoshiki Vázquez-Baeza, Rohit Loomba, Susan Cheng, Mohit Jain, Teemu Niiranen, Leo Lahti, Rob Knight, Veikko Salomaa, Michael Inouye, Guillaume Méric	Nature Genetics	2024-02-29	Abstract
A guideline on the molecular ecosystem regulating ferroptosis.	Enyong Dai, Xin Chen, Andreas Linkermann, Xuejun Jiang, Rui Kang, Valerian E Kagan, Hülya Bayir, Wan Seok Yang, Ana J Garcia-Saez, Maria S Ioannou, Tobias Janowitz, Qitao Ran, Wei Gu, Boyi Gan, Dmitri V Krysko, Xiaofeng Zhu, Jiayi Wang, Stefan Krautwald, Shinya Toyokuni, Yangchun Xie, Florian R Greten, Qing Yi, Joel Schick, Jiao Liu, Dmitry I Gabrilovich, Jinbao Liu, Herbert J Zeh, Donna D Zhang, Minghua Yang, Juan Iovanna, Manfred Kopf, Timon E Adolph, Jen-Tsan Chi, Changfeng Li, Hidenori Ichijo, Michael Karin, Vijay G Sankaran, Weiping Zou, Lorenzo Galluzzi, Ashley I Bush, Binghui Li, Gerry Melino, Eric H Baehrecke, Michael T Lotze, Daniel J Klionsky, Brent R Stockwell, Guido Kroemer, Daolin Tang	Nature Cell Biology	2024-02-29	Abstract
Reduction-to-synthesis: the dominant approach to genome-scale synthetic biology.	Kangsan Kim, Donghui Choe, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho	Trends In Biotechnology	2024-02-28	Abstract
More on Pre-Covid-19, SARS-CoV-2-Negative MIS-C.	Alessandra Franco, Adriana Tremoulet, Jane C Burns	The New England Journal Of Medicine	2024-02-23	Abstract
CXCL12+ dermal fibroblasts promote neutrophil recruitment and host defense by recognition of IL-17.	Kellen J Cavagnero, Fengwu Li, Tatsuya Dokoshi, Teruaki Nakatsuji, Alan M O'Neill, Carlos Aguilera, Edward Liu, Michael Shia, Olive Osuoji, Tissa Hata, Richard L Gallo	The Journal Of Experimental Medicine	2024-02-23	Abstract
Robustness of cancer microbiome signals over a broad range of methodological variation.	Gregory D Sepich-Poore, Daniel McDonald, Evguenia Kopylova, Caitlin Guccione, Qiyun Zhu, George Austin, Carolina Carpenter, Serena Fraraccio, Stephen Wandro, Tomasz Kosciolek, Stefan Janssen, Jessica L Metcalf, Se Jin Song, Jad Kanbar, Sandrine Miller-Montgomery, Robert Heaton, Rana Mckay, Sandip Pravin Patel, Austin D Swafford, Tal Korem, Rob Knight	Oncogene	2024-02-23	Abstract
Lithium response in bipolar disorder is associated with focal adhesion and PI3K-Akt networks: a multi-omics replication study.	Anna H Ou, Sara B Rosenthal, Mazda Adli, Kazufumi Akiyama, Nirmala Akula, Martin Alda, Azmeraw T Amare, Raffaella Ardau, Bárbara Arias, Jean-Michel Aubry, Lena Backlund, Michael Bauer, Bernhard T Baune, Frank Bellivier, Antonio Benabarre, Susanne Bengesser, Abesh Kumar Bhattacharjee, Joanna M Biernacka, Pablo Cervantes, Guo-Bo Chen, Hsi-Chung Chen, Caterina Chillotti, Sven Cichon, Scott R Clark, Francesc Colom, David A Cousins, Cristiana Cruceanu, Piotr M Czerski, Clarissa R Dantas, Alexandre Dayer, Maria Del Zompo, Franziska Degenhardt, J Raymond DePaulo, Bruno Étain, Peter Falkai, Frederike Tabea Fellendorf, Ewa Ferensztajn-Rochowiak, Andreas J Forstner, Louise Frisén, Mark A Frye, Janice M Fullerton, Sébastien Gard, Julie S Garnham, Fernando S Goes, Maria Grigoroiu-Serbanescu, Paul Grof, Oliver Gruber, Ryota Hashimoto, Joanna Hauser, Urs Heilbronner, Stefan Herms, Per Hoffmann, Andrea Hofmann, Liping Hou, Stephane Jamain, Esther Jiménez, Jean-Pierre Kahn, Layla Kassem, Tadafumi Kato, Sarah Kittel-Schneider, Barbara König, Po-Hsiu Kuo, Ichiro Kusumi, Nina Lackner, Gonzalo Laje, Mikael Landén, Catharina Lavebratt, Marion Leboyer, Susan G Leckband, Carlos A López Jaramillo, Glenda MacQueen, Mario Maj, Mirko Manchia, Cynthia Marie-Claire, Lina Martinsson, Manuel Mattheisen, Michael J McCarthy, Susan L McElroy, Francis J McMahon, Philip B Mitchell, Marina Mitjans, Francis M Mondimore, Palmiero Monteleone, Caroline M Nievergelt, Markus M Nöthen, Tomas Novák, Urban Ösby, Norio Ozaki, Sergi Papiol, Roy H Perlis, Claudia Pisanu, James B Potash, Andrea Pfennig, Daniela Reich-Erkelenz, Andreas Reif, Eva Z Reininghaus, Marcella Rietschel, Guy A Rouleau, Janusz K Rybakowski, Martin Schalling, Peter R Schofield, K Oliver Schubert, Thomas G Schulze, Barbara W Schweizer, Florian Seemüller, Giovanni Severino, Tatyana Shekhtman, Paul D Shilling, Kazutaka Shimoda, Christian Simhandl, Claire M Slaney, Alessio Squassina, Thomas Stamm, Pavla Stopkova, Sarah K Tighe, Alfonso Tortorella, Gustavo Turecki, Eduard Vieta, Julia Volkert, Stephanie Witt, Naomi R Wray, Adam Wright, L Trevor Young, Peter P Zandi, John R Kelsoe	Translational Psychiatry	2024-02-23	Abstract
Bacterial Resistance Response and Resource Availability Mediates Viral Coexistence.	Lisa Butt, Justin R Meyer, Richard J Lindsay, Robert E Beardmore, Ivana Gudelj	Journal Of Evolutionary Biology	2024-02-22	Abstract
Lipocalin-2 expression identifies an intestinal regulatory neutrophil population during acute graft-versus-host disease.	Marie Czech, Sophia Schneider, Nina Peltokangas, Nadia El Khawanky, Sakhila Ghimire, Geoffroy Andrieux, Jan Hülsdünker, Máté Krausz, Michele Proietti, Lukas M Braun, Tamina Rückert, Marlene Langenbach, Dominik Schmidt, Ina Martin, Valentin Wenger, Enrique de Vega, Eileen Haring, Mohsen Pourjam, Dietmar Pfeifer, Annette Schmitt-Graeff, Bodo Grimbacher, Konrad Aumann, Brigitte Kircher, Herbert Tilg, Manuela Raffatellu, Erik Thiele Orberg, Georg Häcker, Justus Duyster, Natalie Köhler, Ernst Holler, David Nachbaur, Melanie Boerries, Romana R Gerner, Dominic Grün, Robert Zeiser	Science Translational Medicine	2024-02-21	Abstract
A conserved antigen induces respiratory Th17-mediated broad serotype protection against pneumococcal superinfection.	Xue Liu, Laurye Van Maele, Laura Matarazzo, Daphnée Soulard, Vinicius Alves Duarte da Silva, Vincent de Bakker, Julien Dénéréaz, Florian P Bock, Michael Taschner, Jinzhao Ou, Stephan Gruber, Victor Nizet, Jean-Claude Sirard, Jan-Willem Veening	Cell Host & Microbe	2024-02-21	Abstract
Universal Digital High-Resolution Melt Analysis for the Diagnosis of Bacteremia.	April Aralar, Tyler Goshia, Nanda Ramchandar, Shelley M Lawrence, Aparajita Karmakar, Ankit Sharma, Mridu Sinha, David T Pride, Peiting Kuo, Khrissa Lecrone, Megan Chiu, Karen K Mestan, Eniko Sajti, Michelle Vanderpool, Sarah Lazar, Melanie Crabtree, Yordanos Tesfai, Stephanie I Fraley	The Journal Of Molecular Diagnostics : JMD	2024-02-21	Abstract
Serum aryl hydrocarbon receptor activity is associated with survival in patients with alcohol-associated hepatitis.	Tomoo Yamazaki, Tetsuya Kouno, Cynthia L Hsu, Phillipp Hartmann, Susan Mayo, Xinlian Zhang, Peter Stärkel, Francisco Bosques-Padilla, Elizabeth C Verna, Juan G Abraldes, Robert S Brown, Victor Vargas, Jose Altamirano, Juan Caballería, Debbie L Shawcross, Alexandre Louvet, Michael R Lucey, Philippe Mathurin, Guadalupe Garcia-Tsao, Ramon Bataller, Bernd Schnabl,	Hepatology (Baltimore, Md.)	2024-02-20	Abstract
The role of the microbiome in liver disease.	David Schöler, Bernd Schnabl	Current Opinion In Gastroenterology	2024-02-19	Abstract
Live bacterial therapeutics for detection and treatment of colorectal cancer.	Joanna Zhang, Jeff Hasty, Amir Zarrinpar	Nature Reviews. Gastroenterology & Hepatology	2024-02-14	Abstract
MAR4 : A Unique Resource for Natural Product Discovery.	Douglas Sweeney, Alexander B Chase, Alexander Bogdanov, Paul R Jensen	Journal Of Natural Products	2024-02-14	Abstract
Cytokines in Follicular Helper T Cell Biology in Physiologic and Pathologic Conditions.	Jinyong Choi, Shane Crotty, Youn Soo Choi	Immune Network	2024-02-14	Abstract
Reconstructing the transcriptional regulatory network of probiotic is enabled by transcriptomics and machine learning.	Jonathan Josephs-Spaulding, Akanksha Rajput, Ying Hefner, Richard Szubin, Archana Balasubramanian, Gaoyuan Li, Daniel C Zielinski, Leonie Jahn, Morten Sommer, Patrick Phaneuf, Bernhard O Palsson	MSystems	2024-02-13	Abstract
Coral thermal stress and bleaching enrich and restructure reef microbial communities via altered organic matter exudation.	Wesley J Sparagon, Milou G I Arts, Zachary A Quinlan, Linda Wegley Kelly, Irina Koester, Jacqueline Comstock, Jessica A Bullington, Craig A Carlson, Pieter C Dorrestein, Lihini I Aluwihare, Andreas F Haas, Craig E Nelson	Communications Biology	2024-02-13	Abstract
A conserved interdomain microbial network underpins cadaver decomposition despite environmental variables.	Zachary M Burcham, Aeriel D Belk, Bridget B McGivern, Amina Bouslimani, Parsa Ghadermazi, Cameron Martino, Liat Shenhav, Anru R Zhang, Pixu Shi, Alexandra Emmons, Heather L Deel, Zhenjiang Zech Xu, Victoria Nieciecki, Qiyun Zhu, Michael Shaffer, Morgan Panitchpakdi, Kelly C Weldon, Kalen Cantrell, Asa Ben-Hur, Sasha C Reed, Greg C Humphry, Gail Ackermann, Daniel McDonald, Siu Hung Joshua Chan, Melissa Connor, Derek Boyd, Jake Smith, Jenna M S Watson, Giovanna Vidoli, Dawnie Steadman, Aaron M Lynne, Sibyl Bucheli, Pieter C Dorrestein, Kelly C Wrighton, David O Carter, Rob Knight, Jessica L Metcalf	Nature Microbiology	2024-02-12	Abstract
StressME: Unified computing framework of Escherichia coli metabolism, gene expression, and stress responses.	Jiao Zhao, Ke Chen, Bernhard O Palsson, Laurence Yang	PLoS Computational Biology	2024-02-12	Abstract
Birthmode and environment-dependent microbiota transmission dynamics are complemented by breastfeeding during the first year.	Marta Selma-Royo, Léonard Dubois, Serena Manara, Federica Armanini, Raúl Cabrera-Rubio, Mireia Valles-Colomer, Sonia González, Anna Parra-Llorca, Ramon Escuriet, Lars Bode, Cecilia Martínez-Costa, Nicola Segata, Maria Carmen Collado	Cell Host & Microbe	2024-02-09	Abstract
Predictors of HIV rebound differ by timing of antiretroviral therapy initiation.	Jonathan Z Li, Meghan Melberg, Autumn Kittilson, Mohamed Abdel-Mohsen, Yijia Li, Evgenia Aga, Ronald J Bosch, Elizabeth R Wonderlich, Jennifer Kinslow, Leila B Giron, Clara Di Germanio, Mark Pilkinton, Lynsay MacLaren, Michael Keefer, Lawrence Fox, Liz Barr, Edward Acosta, Jintanat Ananworanich, Robert Coombs, John Mellors, Steven Deeks, Rajesh T Gandhi, Michael Busch, Alan Landay, Bernard Macatangay, Davey M Smith,	JCI Insight	2024-02-08	Abstract
Structure and Biosynthesis of Hectoramide B, a Linear Depsipeptide from Marine Cyanobacterium JHB Discovered via Coculture with .	Thuan-Ethan Ngo, Andrew Ecker, Byeol Ryu, Aurora Guild, Ariana Remmel, Paul D Boudreau, Kelsey L Alexander, C Benjamin Naman, Evgenia Glukhov, Nicole E Avalon, Vikram V Shende, Lamar Thomas, Samira Dahesh, Victor Nizet, Lena Gerwick, William H Gerwick	ACS Chemical Biology	2024-02-08	Abstract
Phenotypic Patterning through Copy Number Adaptation to Environmental Gradients.	Paige Steppe, Camilo Rey-Bedón, Shalni Kumar, Emerald Forrest, Niklas Van Der Wagt, Arnav Tayal, Lev Tsimring, Jeff Hasty	ACS Synthetic Biology	2024-02-08	Abstract
A concept for international societally relevant microbiology education and microbiology knowledge promulgation in society.	Kenneth Timmis, John E Hallsworth, Terry J McGenity, Rachel Armstrong, María Francisca Colom, Zeynep Ceren Karahan, Max Chavarría, Patricia Bernal, Eric S Boyd, Juan Luis Ramos, Martin Kaltenpoth, Carla Pruzzo, Gerard Clarke, Purificación López-Garcia, Michail M Yakimov, Jessamyn Perlmutter, Chris Greening, Emiley Eloe-Fadrosh, Willy Verstraete, Olga C Nunes, Oleg Kotsyurbenko, Pablo Iván Nikel, Paola Scavone, Max M Häggblom, Rob Lavigne, Frédérique Le Roux, James K Timmis, Victor Parro, Carmen Michán, José Luis García, Arturo Casadevall, Shelley M Payne, Joachim Frey, Omry Koren, James I Prosser, Leo Lahti, Rup Lal, Shailly Anand, Utkarsh Sood, Pierre Offre, Casey C Bryce, Allen Y Mswaka, Jörg Jores, Betül Kaçar, Lars Mathias Blank, Nicole Maaßen, Phillip B Pope, Horia L Banciu, Judith Armitage, Sang Yup Lee, Fengping Wang, Thulani P Makhalanyane, Jack A Gilbert, Thomas K Wood, Branka Vasiljevic, Mario Soberón, Zulema Udaondo, Fernando Rojo, Jyoti Prakash Tamang, Tatiana Giraud, Jeanne Ropars, Thaddeus Ezeji, Volker Müller, Hirofume Danbara, Beate Averhoff, Angela Sessitsch, Laila Pamela Partida-Martínez, Wei Huang, Søren Molin, Pilar Junier, Ricardo Amils, Xiao-Lei Wu, Eliora Ron, Huseyin Erten, Elaine Cristina Pereira de Martinis, Alexander Rapoport, Maarja Öpik, W Donald R Pokatong, Courtney Stairs, Mohammad Ali Amoozegar, Jéssica Gil Serna	Microbial Biotechnology	2024-02-08	Abstract
Bile salt hydrolase catalyses formation of amine-conjugated bile acids.	Bipin Rimal, Stephanie L Collins, Ceylan E Tanes, Edson R Rocha, Megan A Granda, Sumeet Solanki, Nushrat J Hoque, Emily C Gentry, Imhoi Koo, Erin R Reilly, Fuhua Hao, Devendra Paudel, Vishal Singh, Tingting Yan, Min Soo Kim, Kyle Bittinger, Joseph P Zackular, Kristopher W Krausz, Dhimant Desai, Shantu Amin, James P Coleman, Yatrik M Shah, Jordan E Bisanz, Frank J Gonzalez, John P Vanden Heuvel, Gary D Wu, Babette S Zemel, Pieter C Dorrestein, Emily E Weinert, Andrew D Patterson	Nature	2024-02-07	Abstract
Machine learning analysis of RB-TnSeq fitness data predicts functional gene modules in KT2440.	Andrew J Borchert, Alissa C Bleem, Hyun Gyu Lim, Kevin Rychel, Keven D Dooley, Zoe A Kellermyer, Tracy L Hodges, Bernhard O Palsson, Gregg T Beckham	MSystems	2024-02-07	Abstract
Co-occurrence network analysis reveals the alterations of the skin microbiome and metabolome in adults with mild to moderate atopic dermatitis.	Paulo Wender P Gomes, Helena Mannochio-Russo, Junhong Mao, Haoqi Nina Zhao, Jacob Ancira, Craig D Tipton, Pieter C Dorrestein, Min Li	MSystems	2024-02-06	Abstract
microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data.	Simone Zuffa, Robin Schmid, Anelize Bauermeister, Paulo Wender P Gomes, Andres M Caraballo-Rodriguez, Yasin El Abiead, Allegra T Aron, Emily C Gentry, Jasmine Zemlin, Michael J Meehan, Nicole E Avalon, Robert H Cichewicz, Ekaterina Buzun, Marvic Carrillo Terrazas, Chia-Yun Hsu, Renee Oles, Adriana Vasquez Ayala, Jiaqi Zhao, Hiutung Chu, Mirte C M Kuijpers, Sara L Jackrel, Fidele Tugizimana, Lerato Pertunia Nephali, Ian A Dubery, Ntakadzeni Edwin Madala, Eduarda Antunes Moreira, Leticia Veras Costa-Lotufo, Norberto Peporine Lopes, Paula Rezende-Teixeira, Paula C Jimenez, Bipin Rimal, Andrew D Patterson, Matthew F Traxler, Rita de Cassia Pessotti, Daniel Alvarado-Villalobos, Giselle Tamayo-Castillo, Priscila Chaverri, Efrain Escudero-Leyva, Luis-Manuel Quiros-Guerrero, Alexandre Jean Bory, Juliette Joubert, Adriano Rutz, Jean-Luc Wolfender, Pierre-Marie Allard, Andreas Sichert, Sammy Pontrelli, Benjamin S Pullman, Nuno Bandeira, William H Gerwick, Katia Gindro, Josep Massana-Codina, Berenike C Wagner, Karl Forchhammer, Daniel Petras, Nicole Aiosa, Neha Garg, Manuel Liebeke, Patric Bourceau, Kyo Bin Kang, Henna Gadhavi, Luiz Pedro Sorio de Carvalho, Mariana Silva Dos Santos, Alicia Isabel Pérez-Lorente, Carlos Molina-Santiago, Diego Romero, Raimo Franke, Mark Brönstrup, Arturo Vera Ponce de León, Phillip Byron Pope, Sabina Leanti La Rosa, Giorgia La Barbera, Henrik M Roager, Martin Frederik Laursen, Fabian Hammerle, Bianka Siewert, Ursula Peintner, Cuauhtemoc Licona-Cassani, Lorena Rodriguez-Orduña, Evelyn Rampler, Felina Hildebrand, Gunda Koellensperger, Harald Schoeny, Katharina Hohenwallner, Lisa Panzenboeck, Rachel Gregor, Ellis Charles O'Neill, Eve Tallulah Roxborough, Jane Odoi, Nicole J Bale, Su Ding, Jaap S Sinninghe Damsté, Xue Li Guan, Jerry J Cui, Kou-San Ju, Denise Brentan Silva, Fernanda Motta Ribeiro Silva, Gilvan Ferreira da Silva, Hector H F Koolen, Carlismari Grundmann, Jason A Clement, Hosein Mohimani, Kirk Broders, Kerry L McPhail, Sidnee E Ober-Singleton, Christopher M Rath, Daniel McDonald, Rob Knight, Mingxun Wang, Pieter C Dorrestein	Nature Microbiology	2024-02-05	Abstract
Diagnostic Ability of Simple Noninvasive Blood Tests to Predict Increased Liver Stiffness in People Living with HIV and Steatotic Liver Disease.	Richard K Sterling, Eduardo Vilar-Gomez, Laura A Wilson ScM, Rohit Loomba, Samer Gawrieh, Jennifer Price, Susanna Naggie, Jordan E Lake, Sonya Heath, James Tonascia, Mark Sulkowski, Naga Chalasani,	The American Journal Of Gastroenterology	2024-02-05	Abstract
Tamm-Horsfall protein augments neutrophil NETosis during urinary tract infection.	Vicki Mercado-Evans, Claude Chew, Camille Serchejian, Alexander Saltzman, Marlyd E Mejia, Jacob J Zulk, Ingrid Cornax, Victor Nizet, Kathryn A Patras	BioRxiv : The Preprint Server For Biology	2024-02-05	Abstract
Viral afterlife: SARS-CoV-2 as a reservoir of immunomimetic peptides that reassemble into proinflammatory supramolecular complexes.	Yue Zhang, Vanthana Bharathi, Tatsuya Dokoshi, Jaime de Anda, Lauryn Tumey Ursery, Nikhil N Kulkarni, Yoshiyuki Nakamura, Jonathan Chen, Elizabeth W C Luo, Lamei Wang, Hua Xu, Alison Coady, Raymond Zurich, Michelle W Lee, Tsutomu Matsui, HongKyu Lee, Liana C Chan, Athena A Schepmoes, Mary S Lipton, Rui Zhao, Joshua N Adkins, Geremy C Clair, Lance R Thurlow, Jonathan C Schisler, Matthew C Wolfgang, Robert S Hagan, Michael R Yeaman, Thomas M Weiss, Xinhua Chen, Melody M H Li, Victor Nizet, Silvio Antoniak, Nigel Mackman, Richard L Gallo, Gerard C L Wong	Proceedings Of The National Academy Of Sciences Of The United States Of America	2024-02-02	Abstract
Fungal signature differentiates alcohol-associated liver disease from nonalcoholic fatty liver disease.	Greta Viebahn, Phillipp Hartmann, Sonja Lang, Münevver Demir, Xinlian Zhang, Derrick E Fouts, Peter Stärkel, Bernd Schnabl	Gut Microbes	2024-02-01	Abstract
Evaluation of the safety and efficacy of fecal microbiota transplantations in bottlenose dolphins (Tursiops truncatus) using metagenomic sequencing.	Barbara K Linnehan, Sho M Kodera, Sarah M Allard, Erin C Brodie, Celeste Allaband, Rob Knight, Holly L Lutz, Maureen C Carroll, Jennifer M Meegan, Eric D Jensen, Jack A Gilbert	Journal Of Applied Microbiology	2024-02-01	Abstract
Analytical Challenges in Omics Research on Asthma and Allergy: A National Institute of Allergy and Infectious Diseases Workshop.	Supinda Bunyavanich, Patrice M Becker, Matthew C Altman, Jessica Lasky-Su, Carole Ober, Karsten Zengler, Evgeny Berdyshev, Richard Bonneau, Talal Chatila, Nilanjan Chatterjee, Kian Fan Chung, Colleen Cutcliffe, Wendy Davidson, Gang Dong, Gang Fang, Patricia Fulkerson, Blanca E Himes, Liming Liang, Rasika A Mathias, Shuji Ogino, Joseph Petrosino, Nathan D Price, Eric Schadt, James Schofield, Max A Seibold, Hanno Steen, Lisa Wheatley, Hongmei Zhang, Alkis Togias, Kohei Hasegawa	The Journal Of Allergy And Clinical Immunology	2024-01-29	Abstract
Competition-driven eco-evolutionary feedback reshapes bacteriophage lambda's fitness landscape and enables speciation.	Michael B Doud, Animesh Gupta, Victor Li, Sarah J Medina, Caesar A De La Fuente, Justin R Meyer	Nature Communications	2024-01-29	Abstract
Inferred regulons are consistent with regulator binding sequences in E. coli.	Sizhe Qiu, Xinlong Wan, Yueshan Liang, Cameron R Lamoureux, Amir Akbari, Bernhard O Palsson, Daniel C Zielinski	PLoS Computational Biology	2024-01-22	Abstract
Variant of the lactase LCT gene explains association between milk intake and incident type 2 diabetes.	Kai Luo, Guo-Chong Chen, Yanbo Zhang, Jee-Young Moon, Jiaqian Xing, Brandilyn A Peters, Mykhaylo Usyk, Zheng Wang, Gang Hu, Jun Li, Elizabeth Selvin, Casey M Rebholz, Tao Wang, Carmen R Isasi, Bing Yu, Rob Knight, Eric Boerwinkle, Robert D Burk, Robert C Kaplan, Qibin Qi	Nature Metabolism	2024-01-22	Abstract
Examining the taxonomic distribution of tetracycline resistance in a wastewater plant.	Howard Ochman, Erik M Quandt, Neil Gottell, Jack A Gilbert	Sustainable Microbiology	2024-01-19	Abstract
Cognitive criteria in HIV: greater consensus is needed.	Lucette A Cysique, Bruce J Brew, Jane Bruning, Desiree Byrd, Jane Costello, Kirstie Daken, Ronald J Ellis, Pariya L Fazeli, Karl Goodkin, Hetta Gouse, Robert K Heaton, Scott Letendre, Jules Levin, Htein Linn Aung, Monica Rivera Mindt, David Moore, Amy B Mullens, Sérgio Monteiro de Almeida, Jose A Muñoz-Moreno, Chrispher Power, Reuben N Robbins, John Rule, Reena Rajasuriar, Micah J Savin, Jeff Taylor, Mattia Trunfio, David E Vance, Pui Li Wong, Steven P Woods, Edwina J Wright, Sean B Rourke	Nature Reviews. Neurology	2024-01-16	Abstract
Integrated Genomic and Social Network Analyses of Severe Acute Respiratory Syndrome Coronavirus 2 Transmission in the Healthcare Setting.	Jocelyn Keehner, Shira R Abeles, Christopher A Longhurst, Lucy E Horton, Frank E Myers, Lindsay Riggs-Rodriguez, Mohammed Ahmad, Sally Baxter, Aaron Boussina, Kalen Cantrell, Priscilla Cardenas, Peter De Hoff, Robert El-Kareh, Jennifer Holland, Daryn Ikeda, Kirk Kurashige, Louise C Laurent, , Andrew Lucas, David Pride, Shashank Sathe, Allen R Tran, Tetyana I Vasylyeva, Gene Yeo, Rob Knight, Joel O Wertheim, Francesca J Torriani	Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America	2024-01-16	Abstract
Comparative molecular profiling of multidrug-resistant identifies novel mutations in regional clinical isolates from South India.	Nitasha D Menon, Priyanka Somanath, Jennifer Jossart, Gayathri Vijayakumar, Kavya Shetty, Manasi Baswe, Meghna Chatterjee, Malavika B Hari, Samitha Nair, V Anil Kumar, Bipin G Nair, Victor Nizet, J Jefferson P Perry, Geetha B Kumar	JAC-antimicrobial Resistance	2024-01-16	Abstract
Outcomes of SARS-CoV-2 and Seasonal Viruses Among Children Hospitalized in Brazil.	Cristiane S Dias, Lilian M Diniz, Maria Christina L Oliveira, Ana Cristina Simões E Silva, Enrico A Colosimo, Robert H Mak, Clara C Pinhati, Stella C Galante, Isadora Y Veloso, Hercílio Martelli-Júnior, Eduardo A Oliveira	Pediatrics	2024-01-12	Abstract
A multi-study analysis enables identification of potential microbial features associated with skin aging signs.	Tyler Myers, Amina Bouslimani, Shi Huang, Shalisa T Hansen, Cécile Clavaud, Anissa Azouaoui, Alban Ott, Audrey Gueniche, Charbel Bouez, Qian Zheng, Luc Aguilar, Rob Knight, Magali Moreau, Se Jin Song	Frontiers In Aging	2024-01-11	Abstract
A vascularized 3D model of the human pancreatic islet forstudy of immune cell-islet interaction.	R Hugh F Bender, Benjamen T O'Donnell, Bhupinder Shergill, Brittany Q Pham, Sima Tahmouresie, Celeste N Sanchez, Damie J Juat, Michaela M S Hatch, Venktesh S Shirure, Matthew Wortham, Kim-Vy Nguyen-Ngoc, Yesl Jun, Roberto Gaetani, Karen L Christman, Luc Teyton, Steven C George, Maike Sander, Christopher C W Hughes	Biofabrication	2024-01-11	Abstract
Functional metabolomics of the human scalp: a metabolic niche for .	Louis-Félix Nothias, Robin Schmid, Allison Garlet, Hunter Cameron, Sabrina Leoty-Okombi, Valérie André-Frei, Regine Fuchs, Pieter C Dorrestein, Philipp Ternes	MSystems	2024-01-11	Abstract
Elf1 promotes Rad26's interaction with lesion-arrested Pol II for transcription-coupled repair.	Reta D Sarsam, Jun Xu, Indrajit Lahiri, Wenzhi Gong, Qingrong Li, Juntaek Oh, Zhen Zhou, Peini Hou, Jenny Chong, Nan Hao, Shisheng Li, Dong Wang, Andres E Leschziner	Proceedings Of The National Academy Of Sciences Of The United States Of America	2024-01-09	Abstract
A bacterial sialidase mediates early-life colonization by a pioneering gut commensal.	Ekaterina Buzun, Chia-Yun Hsu, Kristija Sejane, Renee E Oles, Adriana Vasquez Ayala, Luke R Loomis, Jiaqi Zhao, Leigh-Ana Rossitto, Dominic M McGrosso, David J Gonzalez, Lars Bode, Hiutung Chu	Cell Host & Microbe	2024-01-09	Abstract
Independent component analysis reveals 49 independently modulated gene sets within the global transcriptional regulatory architecture of multidrug-resistant .	Nitasha D Menon, Saugat Poudel, Anand V Sastry, Kevin Rychel, Richard Szubin, Nicholas Dillon, Hannah Tsunemoto, Yujiro Hirose, Bipin G Nair, Geetha B Kumar, Bernhard O Palsson, Victor Nizet	MSystems	2024-01-08	Abstract
The inner workings of an ancient biological clock.	Mingxu Fang, Andy LiWang, Susan S Golden, Carrie L Partch	Trends In Biochemical Sciences	2024-01-06	Abstract
Effects of Opioid Withdrawal on Psychobiology in People Living with HIV.	Igor Grant, Evgeny Krupitsky, Marina Vetrova, Anya Umlauf, Robert K Heaton, Richard L Hauger, Olga Toussova, Donald R Franklin, Scott L Letendre, George Woody, Elena Blokhina, Dmitry Lioznov, Edwin Zvartau	Viruses	2024-01-06	Abstract
Adaptation of the brainwriting premortem technique to inform the co-creation of COVID-19 testing strategies in underserved communities in South San Diego.	Borsika A Rabin, Kelli L Cain, Lawrence O Ayers, Angel Lomeli, Arleth Escoto, Maria Linda Burola, Melanie Aguilar, Stephenie Tinoco Calvillo, Breanna Reyes, Linda Salgin, Robert Tukey, Louise C Laurent, Nicole A Stadnick	BMC Health Services Research	2024-01-03	Abstract
The shikimate pathway: gateway to metabolic diversity.	Vikram V Shende, Katherine D Bauman, Bradley S Moore	Natural Product Reports	2024-01-03	Abstract
Decentralized ORP Measurements for Gut Redox Status Monitoring: Toward Personalized Gut Microbiota Balance.	Víctor Ruiz-Valdepeñas Montiel, Eva Vargas, Amira Ben Hassine, Ignasi Simon, Andres Duvvuri, An-Yi Chang, Ponnusamy Nandhakumar, Andrea Bulbarello, André Düsterloh, Tim Mak, Joseph Wang	Analytical Chemistry	2023-12-27	Abstract
Decoding human cytomegalovirus for the development of innovative diagnostics to detect congenital infection.	Shelley M Lawrence, Tyler Goshia, Mridu Sinha, Stephanie I Fraley, Marvin Williams	Pediatric Research	2023-12-25	Abstract
Pan-cancer analysis of TIM-3 transcriptomic expression reveals high levels in pancreatic cancer and interpatient heterogeneity.	Jungah Lim, Razelle Kurzrock, Daisuke Nishizaki, Hirotaka Miyashita, Jacob J Adashek, Suzanna Lee, Sarabjot Pabla, Mary Nesline, Jeffrey M Conroy, Paul DePietro, Scott M Lippman, Shumei Kato	Cancer Medicine	2023-12-22	Abstract
SARS-CoV-2 variants are associated with different clinical courses in children with MIS-C.	Andres F Moreno Rojas, Emelia Bainto, Helen Harvey, Adriana H Tremoulet, Jane C Burns, Kirsten B Dummer	World Journal Of Pediatrics : WJP	2023-12-22	Abstract
Pangenome comparison of genomospecies unveil genetic diversity and ecological insights.	Renee E Oles, Marvic Carrillo Terrazas, Luke R Loomis, Chia-Yun Hsu, Caitlin Tribelhorn, Pedro Belda Ferre, Allison Ea, MacKenzie Bryant, Jocelyn Young, Hannah C Carrow, William J Sandborn, Parambir Dulai, Mamata Sivagnanam, David Pride, Rob Knight, Hiutung Chu	BioRxiv : The Preprint Server For Biology	2023-12-21	Abstract
Exploring Roles of the Polysaccharide Capsule in Pathogenesis of Hypervirulent Clinical Isolate Lac-4.	Elisabet Bjånes, Truman Koh, Tariq Qayum, Raymond Zurich, Sinead McCabe, Kegan Hampel, Lisa Cartwright, Victor Nizet	Antibiotics (Basel, Switzerland)	2023-12-20	Abstract
Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics.	Wout Bittremieux, Nicole E Avalon, Sydney P Thomas, Sarvar A Kakhkhorov, Alexander A Aksenov, Paulo Wender P Gomes, Christine M Aceves, Andrés Mauricio Caraballo-Rodríguez, Julia M Gauglitz, William H Gerwick, Tao Huan, Alan K Jarmusch, Rima F Kaddurah-Daouk, Kyo Bin Kang, Hyun Woo Kim, Todor Kondić, Helena Mannochio-Russo, Michael J Meehan, Alexey V Melnik, Louis-Felix Nothias, Claire O'Donovan, Morgan Panitchpakdi, Daniel Petras, Robin Schmid, Emma L Schymanski, Justin J J van der Hooft, Kelly C Weldon, Heejung Yang, Shipei Xing, Jasmine Zemlin, Mingxun Wang, Pieter C Dorrestein	Nature Communications	2023-12-20	Abstract
Response to Daungsupawong and Wiwanitkitre: "Validating Tools to Detect and Inactivate Monkeypox Virus in Human Milk".	Lars Bode	Breastfeeding Medicine : The Official Journal Of The Academy Of Breastfeeding Medicine	2023-12-18	Abstract
Microbial Players in Primary Sclerosing Cholangitis - current evidence and concepts.	Burcin Özdirik, Bernd Schnabl	Cellular And Molecular Gastroenterology And Hepatology	2023-12-16	Abstract
Effects of variation in sample storage conditions and swab order on 16S vaginal microbiome analyses.	Tanya Kumar, MacKenzie Bryant, Kalen Cantrell, Se Jin Song, Daniel McDonald, Helena M Tubb, Sawyer Farmer, Amanda Lewis, Emily S Lukacz, Linda Brubaker, Rob Knight	Microbiology Spectrum	2023-12-14	Abstract
Commensal bacteria promote type I interferon signaling to maintain immune tolerance in mice.	Adriana Vasquez Ayala, Chia-Yun Hsu, Renee E Oles, Kazuhiko Matsuo, Luke R Loomis, Ekaterina Buzun, Marvic Carrillo Terrazas, Romana R Gerner, Hsueh-Han Lu, Sohee Kim, Ziyue Zhang, Jong Hwee Park, Paul Rivaud, Matt Thomson, Li-Fan Lu, Booki Min, Hiutung Chu	The Journal Of Experimental Medicine	2023-12-12	Abstract
Elevated Plasma Protein Carbonyl Concentration Is Associated with More Abnormal White Matter in People with HIV.	Patricia K Riggs, Albert M Anderson, Bin Tang, Leah H Rubin, Susan Morgello, Christina M Marra, Benjamin B Gelman, David B Clifford, Donald Franklin, Robert K Heaton, Ronald J Ellis, Christine Fennema-Notestine, Scott L Letendre	Viruses	2023-12-12	Abstract
The brain, gut, and bladder health nexus: A conceptual model linking stress and mental health disorders to overactive bladder in women.	Ariana L Smith, Amanda Berry, Linda Brubaker, Shayna D Cunningham, Sheila Gahagan, Lisa Kane Low, Margaret Mueller, Siobhan Sutcliffe, Beverly R Williams, Sonya S Brady,	Neurourology And Urodynamics	2023-12-11	Abstract
A Standardized Set of MoClo-Compatible Inducible Promoter Systems for Tunable Gene Expression in Yeast.	Richard O'Laughlin, Quoc Tran, Andrew Lezia, Wasu Ngamkanjanarat, Philip Emmanuele, Nan Hao, Jeff Hasty	ACS Synthetic Biology	2023-12-11	Abstract
Genomic and Phenotypic Insight into the Probiotic Potential of Lactic Acid Bacterial spp. Associated with the Human Gut Mucosa.	Kanwal Aziz, Jack A Gilbert, Arsalan Haseeb Zaidi	Probiotics And Antimicrobial Proteins	2023-12-09	Abstract
Reverse metabolomics for the discovery of chemical structures from humans.	Emily C Gentry, Stephanie L Collins, Morgan Panitchpakdi, Pedro Belda-Ferre, Allison K Stewart, Marvic Carrillo Terrazas, Hsueh-Han Lu, Simone Zuffa, Tingting Yan, Julian Avila-Pacheco, Damian R Plichta, Allegra T Aron, Mingxun Wang, Alan K Jarmusch, Fuhua Hao, Mashette Syrkin-Nikolau, Hera Vlamakis, Ashwin N Ananthakrishnan, Brigid Boland, Amy Hemperly, Niels Vande Casteele, Frank J Gonzalez, Clary B Clish, Ramnik J Xavier, Hiutung Chu, Erin S Baker, Andrew D Patterson, Rob Knight, Dionicio Siegel, Pieter C Dorrestein	Nature	2023-12-05	Abstract
Commensal Oral Microbiota, Disease Severity and Mortality in Fibrotic Lung Disease.	David N O'Dwyer, John S Kim, Shwu-Fan Ma, Piyush Ranjan, Promi Das, Jay H Lipinski, Joseph D Metcalf, Nicole R Falkowski, Eric Yow, Kevin Anstrom, Robert P Dickson, Yong Huang, Jack A Gilbert, Fernando J Martinez, Imre Noth	American Journal Of Respiratory And Critical Care Medicine	2023-12-05	Abstract
Genomic surveillance reveals dynamic shifts in the connectivity of COVID-19 epidemics.	Nathaniel L Matteson, Gabriel W Hassler, Ezra Kurzban, Madison A Schwab, Sarah A Perkins, Karthik Gangavarapu, Joshua I Levy, Edyth Parker, David Pride, Abbas Hakim, Peter De Hoff, Willi Cheung, Anelizze Castro-Martinez, Andrea Rivera, Anthony Veder, Ariana Rivera, Cassandra Wauer, Jacqueline Holmes, Jedediah Wilson, Shayla N Ngo, Ashley Plascencia, Elijah S Lawrence, Elizabeth W Smoot, Emily R Eisner, Rebecca Tsai, Marisol Chacón, Nathan A Baer, Phoebe Seaver, Rodolfo A Salido, Stefan Aigner, Toan T Ngo, Tom Barber, Tyler Ostrander, Rebecca Fielding-Miller, Elizabeth H Simmons, Oscar E Zazueta, Idanya Serafin-Higuera, Manuel Sanchez-Alavez, Jose L Moreno-Camacho, Abraham García-Gil, Ashleigh R Murphy Schafer, Eric McDonald, Jeremy Corrigan, John D Malone, Sarah Stous, Seema Shah, Niema Moshiri, Alana Weiss, Catelyn Anderson, Christine M Aceves, Emily G Spencer, Emory C Hufbauer, Justin J Lee, Alison J King, Karthik S Ramesh, Kelly N Nguyen, Kieran Saucedo, Refugio Robles-Sikisaka, Kathleen M Fisch, Steven L Gonias, Amanda Birmingham, Daniel McDonald, Smruthi Karthikeyan, Natasha K Martin, Robert T Schooley, Agustin J Negrete, Horacio J Reyna, Jose R Chavez, Maria L Garcia, Jose M Cornejo-Bravo, David Becker, Magnus Isaksson, Nicole L Washington, William Lee, Richard S Garfein, Marco A Luna-Ruiz Esparza, Jonathan Alcántar-Fernández, Benjamin Henson, Kristen Jepsen, Beatriz Olivares-Flores, Gisela Barrera-Badillo, Irma Lopez-Martínez, José E Ramírez-González, Rita Flores-León, Stephen F Kingsmore, Alison Sanders, Allorah Pradenas, Benjamin White, Gary Matthews, Matt Hale, Ronald W McLawhon, Sharon L Reed, Terri Winbush, Ian H McHardy, Russel A Fielding, Laura Nicholson, Michael M Quigley, Aaron Harding, Art Mendoza, Omid Bakhtar, Sara H Browne, Jocelyn Olivas Flores, Diana G Rincon Rodríguez, Martin Gonzalez Ibarra, Luis C Robles Ibarra, Betsy J Arellano Vera, Jonathan Gonzalez Garcia, Alicia Harvey-Vera, Rob Knight, Louise C Laurent, Gene W Yeo, Joel O Wertheim, Xiang Ji, Michael Worobey, Marc A Suchard, Kristian G Andersen, Abraham Campos-Romero, Shirlee Wohl, Mark Zeller	Cell	2023-12-05	Abstract