Publications

These are the LAST 12 MONTHS of publications from the CMI membership team.

To see or search all of the publications, visit the archives page.

Article	Authors	Journal	Date	Abstract	Reach
Acute alcohol-associated hepatitis: Latest findings in non-invasive biomarkers and treatment.	Tomoo Yamazaki, Bernd Schnabl	Liver International : Official Journal Of The International Association For The Study Of The Liver	2023-05-15	Abstract
Transcriptional programming of CD4 T differentiation in viral infection balances effector- and memory-associated gene expression.	Quynh P Nguyen, Kennidy K Takehara, Tianda Z Deng, Shannon O'Shea, Maximilian Heeg, Kyla D Omilusik, J Justin Milner, Sara Quon, Matthew E Pipkin, Jinyong Choi, Shane Crotty, Ananda W Goldrath	Science Immunology	2023-05-12	Abstract
Tryptophan metabolism, gut microbiota, and carotid artery plaque in women with and without HIV infection.	Kai Luo, Zheng Wang, Brandilyn A Peters, David B Hanna, Tao Wang, Christopher C Sollecito, Evan Grassi, Fanua Wiek, Lauren St Peter, Mykhaylo Usyk, Wendy S Post, Alan L Landay, Howard N Hodis, Kathleen M Weber, Audrey French, Elizabeth T Golub, Jason Lazar, Deborah Gustafson, Anjali Sharma, Kathryn Anastos, Clary B Clish, Rob Knight, Robert C Kaplan, Robert D Burk, Qibin Qi	AIDS (London, England)	2023-05-12	Abstract
Competition between skin antimicrobial peptides and commensal bacteria in type 2 inflammation enables survival of S. aureus.	Teruaki Nakatsuji, Samantha L Brinton, Kellen J Cavagnero, Alan M O'Neill, Yang Chen, Tatsuya Dokoshi, Anna M Butcher, Olive C Osuoji, Faiza Shafiq, Josh L Espinoza, Christopher L Dupont, Tissa R Hata, Richard L Gallo	Cell Reports	2023-05-10	Abstract
Universal gut microbial relationships in the gut microbiome of wild baboons.	Kimberly E Roche, Johannes R Bjork, Mauna R Dasari, Laura Grieneisen, David A W A M Jansen, Trevor J Gould, Laurence R Gesquiere, Luis B Barreiro, Susan C Alberts, Ran Blekhman, Jack A Gilbert, Jenny Tung, Sayan Mukherjee, Elizabeth A Archie	ELife	2023-05-09	Abstract
Fecal cytolysin does not predict disease severity in acutely decompensated cirrhosis and acute-on-chronic liver failure.	Phillipp Hartmann, Sonja Lang, Robert Schierwagen, Sabine Klein, Michael Praktiknjo, Jonel Trebicka, Bernd Schnabl	Hepatobiliary & Pancreatic Diseases International : HBPD INT	2023-05-09	Abstract
Hepatic stellate cell stearoyl co-A desaturase activates leukotriene B4 receptor 2 - β-catenin cascade to promote liver tumorigenesis.	Sonal Sinha, Satoka Aizawa, Yasuhiro Nakano, Alexander Rialdi, Hye Yeon Choi, Rajan Shrestha, Stephanie Q Pan, Yibu Chen, Meng Li, Audrey Kapelanski-Lamoureux, Gregory Yochum, Linda Sher, Satdarshan Paul Monga, Anthoula Lazaris, Keigo Machida, Michael Karin, Ernesto Guccione, Hidekazu Tsukamoto	Nature Communications	2023-05-08	Abstract
E. coli allantoinase is activated by the downstream metabolic enzyme, glycerate kinase, and stabilizes the putative allantoin transporter by direct binding.	Irina A Rodionova, Ali Hosseinnia, Sunyoung Kim, Norman Goodacre, Li Zhang, Zhongge Zhang, Bernhard Palsson, Peter Uetz, Mohan Babu, Milton H Saier	Scientific Reports	2023-05-05	Abstract
Herbivorous Fish Microbiome Adaptations to Sulfated Dietary Polysaccharides.	Sheila Podell, Aaron Oliver, Linda Wegley Kelly, Wesley J Sparagon, Alvaro M Plominsky, Robert S Nelson, Lieve M L Laurens, Simona Augyte, Neil A Sims, Craig E Nelson, Eric E Allen	Applied And Environmental Microbiology	2023-05-03	Abstract
Evaluation of Autoantibody Binding to Cardiac Tissue in Multisystem Inflammatory Syndrome in Children and COVID-19 Vaccination-Induced Myocarditis.	Harsita Patel, Amalia Sintou, Rasheda A Chowdhury, Stephen Rothery, Alma Octavia Iacob, Sanjay Prasad, Peter P Rainer, Federico Martinón-Torres, Vanessa Sancho-Shimizu, Chisato Shimizu, Kirsten Dummer, Adriana H Tremoulet, Jane C Burns, Susanne Sattler, Michael Levin,	JAMA Network Open	2023-05-01	Abstract
Mast cell tolerance in the skin microenvironment to commensal bacteria is controlled by fibroblasts.	Anna Di Nardo, Yu-Ling Chang, Shahrzad Alimohammadi, Kana Masuda-Kuroki, Zhenping Wang, Krishna Sriram, Paul A Insel	Cell Reports	2023-04-28	Abstract
Identifying the core genome of the nucleus-forming bacteriophage family and characterization of Erwinia phage RAY.	Amy Prichard, Jina Lee, Thomas G Laughlin, Amber Lee, Kyle P Thomas, Annika E Sy, Tara Spencer, Aileen Asavavimol, Allison Cafferata, Mia Cameron, Nicholas Chiu, Demyan Davydov, Isha Desai, Gabriel Diaz, Melissa Guereca, Kiley Hearst, Leyi Huang, Emily Jacobs, Annika Johnson, Samuel Kahn, Ryan Koch, Adamari Martinez, Meliné Norquist, Tyler Pau, Gino Prasad, Katrina Saam, Milan Sandhu, Angel Jose Sarabia, Siena Schumaker, Aaron Sonin, Ariya Uyeno, Alison Zhao, Kevin D Corbett, Kit Pogliano, Justin Meyer, Julianne H Grose, Elizabeth Villa, Rachel Dutton, Joe Pogliano	Cell Reports	2023-04-28	Abstract
Evolutionary constraint and innovation across hundreds of placental mammals.	Matthew J Christmas, Irene M Kaplow, Diane P Genereux, Michael X Dong, Graham M Hughes, Xue Li, Patrick F Sullivan, Allyson G Hindle, Gregory Andrews, Joel C Armstrong, Matteo Bianchi, Ana M Breit, Mark Diekhans, Cornelia Fanter, Nicole M Foley, Daniel B Goodman, Linda Goodman, Kathleen C Keough, Bogdan Kirilenko, Amanda Kowalczyk, Colleen Lawless, Abigail L Lind, Jennifer R S Meadows, Lucas R Moreira, Ruby W Redlich, Louise Ryan, Ross Swofford, Alejandro Valenzuela, Franziska Wagner, Ola Wallerman, Ashley R Brown, Joana Damas, Kaili Fan, John Gatesy, Jenna Grimshaw, Jeremy Johnson, Sergey V Kozyrev, Alyssa J Lawler, Voichita D Marinescu, Kathleen M Morrill, Austin Osmanski, Nicole S Paulat, BaDoi N Phan, Steven K Reilly, Daniel E Schäffer, Cynthia Steiner, Megan A Supple, Aryn P Wilder, Morgan E Wirthlin, James R Xue, , Bruce W Birren, Steven Gazal, Robert M Hubley, Klaus-Peter Koepfli, Tomas Marques-Bonet, Wynn K Meyer, Martin Nweeia, Pardis C Sabeti, Beth Shapiro, Arian F A Smit, Mark S Springer, Emma C Teeling, Zhiping Weng, Michael Hiller, Danielle L Levesque, Harris A Lewin, William J Murphy, Arcadi Navarro, Benedict Paten, Katherine S Pollard, David A Ray, Irina Ruf, Oliver A Ryder, Andreas R Pfenning, Kerstin Lindblad-Toh, Elinor K Karlsson	Science (New York, N.Y.)	2023-04-28	Abstract
The contribution of historical processes to contemporary extinction risk in placental mammals.	Aryn P Wilder, Megan A Supple, Ayshwarya Subramanian, Anish Mudide, Ross Swofford, Aitor Serres-Armero, Cynthia Steiner, Klaus-Peter Koepfli, Diane P Genereux, Elinor K Karlsson, Kerstin Lindblad-Toh, Tomas Marques-Bonet, Violeta Munoz Fuentes, Kathleen Foley, Wynn K Meyer, , Oliver A Ryder, Beth Shapiro	Science (New York, N.Y.)	2023-04-28	Abstract
Engineering longevity-design of a synthetic gene oscillator to slow cellular aging.	Zhen Zhou, Yuting Liu, Yushen Feng, Stephen Klepin, Lev S Tsimring, Lorraine Pillus, Jeff Hasty, Nan Hao	Science (New York, N.Y.)	2023-04-27	Abstract
Gut microbiome and atrial fibrillation-results from a large population-based study.	Joonatan Palmu, Christin S Börschel, Alfredo Ortega-Alonso, Lajos Markó, Michael Inouye, Pekka Jousilahti, Rodolfo A Salido, Karenina Sanders, Caitriona Brennan, Gregory C Humphrey, Jon G Sanders, Friederike Gutmann, Dominik Linz, Veikko Salomaa, Aki S Havulinna, Sofia K Forslund, Rob Knight, Leo Lahti, Teemu Niiranen, Renate B Schnabel	EBioMedicine	2023-04-27	Abstract
Apoptotic cell death in disease-Current understanding of the NCCD 2023.	Ilio Vitale, Federico Pietrocola, Emma Guilbaud, Stuart A Aaronson, John M Abrams, Dieter Adam, Massimiliano Agostini, Patrizia Agostinis, Emad S Alnemri, Lucia Altucci, Ivano Amelio, David W Andrews, Rami I Aqeilan, Eli Arama, Eric H Baehrecke, Siddharth Balachandran, Daniele Bano, Nickolai A Barlev, Jiri Bartek, Nicolas G Bazan, Christoph Becker, Francesca Bernassola, Mathieu J M Bertrand, Marco E Bianchi, Mikhail V Blagosklonny, J Magarian Blander, Giovanni Blandino, Klas Blomgren, Christoph Borner, Carl D Bortner, Pierluigi Bove, Patricia Boya, Catherine Brenner, Petr Broz, Thomas Brunner, Rune Busk Damgaard, George A Calin, Michelangelo Campanella, Eleonora Candi, Michele Carbone, Didac Carmona-Gutierrez, Francesco Cecconi, Francis K-M Chan, Guo-Qiang Chen, Quan Chen, Youhai H Chen, Emily H Cheng, Jerry E Chipuk, John A Cidlowski, Aaron Ciechanover, Gennaro Ciliberto, Marcus Conrad, Juan R Cubillos-Ruiz, Peter E Czabotar, Vincenzo D'Angiolella, Mads Daugaard, Ted M Dawson, Valina L Dawson, Ruggero De Maria, Bart De Strooper, Klaus-Michael Debatin, Ralph J Deberardinis, Alexei Degterev, Giannino Del Sal, Mohanish Deshmukh, Francesco Di Virgilio, Marc Diederich, Scott J Dixon, Brian D Dynlacht, Wafik S El-Deiry, John W Elrod, Kurt Engeland, Gian Maria Fimia, Claudia Galassi, Carlo Ganini, Ana J Garcia-Saez, Abhishek D Garg, Carmen Garrido, Evripidis Gavathiotis, Motti Gerlic, Sourav Ghosh, Douglas R Green, Lloyd A Greene, Hinrich Gronemeyer, Georg Häcker, György Hajnóczky, J Marie Hardwick, Ygal Haupt, Sudan He, David M Heery, Michael O Hengartner, Claudio Hetz, David A Hildeman, Hidenori Ichijo, Satoshi Inoue, Marja Jäättelä, Ana Janic, Bertrand Joseph, Philipp J Jost, Thirumala-Devi Kanneganti, Michael Karin, Hamid Kashkar, Thomas Kaufmann, Gemma L Kelly, Oliver Kepp, Adi Kimchi, Richard N Kitsis, Daniel J Klionsky, Ruth Kluck, Dmitri V Krysko, Dagmar Kulms, Sharad Kumar, Sergio Lavandero, Inna N Lavrik, John J Lemasters, Gianmaria Liccardi, Andreas Linkermann, Stuart A Lipton, Richard A Lockshin, Carlos López-Otín, Tom Luedde, Marion MacFarlane, Frank Madeo, Walter Malorni, Gwenola Manic, Roberto Mantovani, Saverio Marchi, Jean-Christophe Marine, Seamus J Martin, Jean-Claude Martinou, Pier G Mastroberardino, Jan Paul Medema, Patrick Mehlen, Pascal Meier, Gerry Melino, Sonia Melino, Edward A Miao, Ute M Moll, Cristina Muñoz-Pinedo, Daniel J Murphy, Maria Victoria Niklison-Chirou, Flavia Novelli, Gabriel Núñez, Andrew Oberst, Dimitry Ofengeim, Joseph T Opferman, Moshe Oren, Michele Pagano, Theocharis Panaretakis, Manolis Pasparakis, Josef M Penninger, Francesca Pentimalli, David M Pereira, Shazib Pervaiz, Marcus E Peter, Paolo Pinton, Giovanni Porta, Jochen H M Prehn, Hamsa Puthalakath, Gabriel A Rabinovich, Krishnaraj Rajalingam, Kodi S Ravichandran, Markus Rehm, Jean-Ehrland Ricci, Rosario Rizzuto, Nirmal Robinson, Cecilia M P Rodrigues, Barak Rotblat, Carla V Rothlin, David C Rubinsztein, Thomas Rudel, Alessandro Rufini, Kevin M Ryan, Kristopher A Sarosiek, Akira Sawa, Emre Sayan, Kate Schroder, Luca Scorrano, Federico Sesti, Feng Shao, Yufang Shi, Giuseppe S Sica, John Silke, Hans-Uwe Simon, Antonella Sistigu, Anastasis Stephanou, Brent R Stockwell, Flavie Strapazzon, Andreas Strasser, Liming Sun, Erwei Sun, Qiang Sun, Gyorgy Szabadkai, Stephen W G Tait, Daolin Tang, Nektarios Tavernarakis, Carol M Troy, Boris Turk, Nicoletta Urbano, Peter Vandenabeele, Tom Vanden Berghe, Matthew G Vander Heiden, Jacqueline L Vanderluit, Alexei Verkhratsky, Andreas Villunger, Silvia von Karstedt, Anne K Voss, Karen H Vousden, Domagoj Vucic, Daniela Vuri, Erwin F Wagner, Henning Walczak, David Wallach, Ruoning Wang, Ying Wang, Achim Weber, Will Wood, Takahiro Yamazaki, Huang-Tian Yang, Zahra Zakeri, Joanna E Zawacka-Pankau, Lin Zhang, Haibing Zhang, Boris Zhivotovsky, Wenzhao Zhou, Mauro Piacentini, Guido Kroemer, Lorenzo Galluzzi	Cell Death And Differentiation	2023-04-26	Abstract
Sequence-structure-function relationships in the microbial protein universe.	Julia Koehler Leman, Pawel Szczerbiak, P Douglas Renfrew, Vladimir Gligorijevic, Daniel Berenberg, Tommi Vatanen, Bryn C Taylor, Chris Chandler, Stefan Janssen, Andras Pataki, Nick Carriero, Ian Fisk, Ramnik J Xavier, Rob Knight, Richard Bonneau, Tomasz Kosciolek	Nature Communications	2023-04-26	Abstract
Susceptibility antibiotic screening reveals high rates of multidrug resistance of Salmonella, Shigella and Campylobacter in HIV infected and uninfected patients from Mozambique.	Delfina F Hlashwayo, Emília V Noormahomed, Leonilde Bahule, Constance A Benson, Robert T Schooley, Betuel Sigaúque, Kim E Barrett, Custódio G Bila	BMC Infectious Diseases	2023-04-21	Abstract
Preface: Gamma-Delta T Cells in Inflammation Part 1.	Benjamin Bonavida, Vipin Kumar	Critical Reviews In Immunology	2023-04-21	Abstract
Crosstalk between skin microbiota and immune system in health and disease.	Qian Liu, Ryan Ranallo, Carmen Rios, Elizabeth A Grice, Kyung Moon, Richard L Gallo	Nature Immunology	2023-04-20	Abstract
Kernel-based genetic association analysis for microbiome phenotypes identifies host genetic drivers of beta-diversity.	Hongjiao Liu, Wodan Ling, Xing Hua, Jee-Young Moon, Jessica S Williams-Nguyen, Xiang Zhan, Anna M Plantinga, Ni Zhao, Angela Zhang, Rob Knight, Qibin Qi, Robert D Burk, Robert C Kaplan, Michael C Wu	Microbiome	2023-04-20	Abstract
Safety and Efficacy of Combination SARS-CoV-2 Neutralizing Monoclonal Antibodies Amubarvimab Plus Romlusevimab in Nonhospitalized Patients With COVID-19.	Teresa H Evering, Kara W Chew, Mark J Giganti, Carlee Moser, Mauricio Pinilla, David Alain Wohl, Judith S Currier, Joseph J Eron, Arzhang Cyrus Javan, Rachel Bender Ignacio, David Margolis, Qing Zhu, Ji Ma, Lijie Zhong, Li Yan, Ulises D'Andrea Nores, Keila Hoover, Bharat Mocherla, Manish C Choudhary, Rinki Deo, Justin Ritz, William A Fischer, Courtney V Fletcher, Jonathan Z Li, Michael D Hughes, Davey Smith, Eric S Daar,	Annals Of Internal Medicine	2023-04-18	Abstract
Biogeographic patterns of biosynthetic potential and specialized metabolites in marine sediments.	Alexander B Chase, Alexander Bogdanov, Alyssa M Demko, Paul R Jensen	The ISME Journal	2023-04-15	Abstract
Signatures of HIV and Major Depressive Disorder in the Plasma Microbiome.	Bryn C Taylor, Mohammadsobhan Sheikh Andalibi, Stephen Wandro, Kelly C Weldon, Gregory D Sepich-Poore, Carolina S Carpenter, Serena Fraraccio, Donald Franklin, Jennifer E Iudicello, Scott Letendre, Sara Gianella, Igor Grant, Ronald J Ellis, Robert K Heaton, Rob Knight, Austin D Swafford	Microorganisms	2023-04-14	Abstract
Toll-like receptor 2 activation in monocytes contributes to systemic inflammation and alcohol-associated liver disease in humans.	Luca Maccioni, Joyce Kasavuli, Sophie Leclercq, Boris Pirlot, Géraldine Laloux, Yves Horsmans, Isabelle Leclercq, Bernd Schnabl, Peter Stärkel	Hepatology Communications	2023-04-14	Abstract
An integrated view of anti-inflammatory and antifibrotic targets for the treatment of NASH.	Frank Tacke, Tobias Puengel, Rohit Loomba, Scott L Friedman	Journal Of Hepatology	2023-04-13	Abstract
Role of the Microbiome in Gut-Heart-Kidney Cross Talk.	Griet Glorieux, Sanjay K Nigam, Raymond Vanholder, Francis Verbeke	Circulation Research	2023-04-13	Abstract
Chromosomal fragile site breakage by EBV-encoded EBNA1 at clustered repeats.	Julia Su Zhou Li, Ammal Abbasi, Dong Hyun Kim, Scott M Lippman, Ludmil B Alexandrov, Don W Cleveland	Nature	2023-04-12	Abstract
DNA architectural protein CTCF facilitates subset-specific chromatin interactions to limit the formation of memory CD8 T cells.	Sara Quon, Bingfei Yu, Brendan E Russ, Kirill Tsyganov, Hongtuyet Nguyen, Clara Toma, Maximilian Heeg, James D Hocker, J Justin Milner, Shane Crotty, Matthew E Pipkin, Stephen J Turner, Ananda W Goldrath	Immunity	2023-04-10	Abstract
Part 2 Preface: Immune Checkpoint Inhibitors and Adverse Autoimmune Manifestations.	Vipin Kumar, Benjamin Bonavida	Critical Reviews In Immunology	2023-04-10	Abstract
Preface Part 1: Immune Checkpoint Inhibitors and Autoimmunity.	Vipin Kumar, Benjamin Bonavida	Critical Reviews In Immunology	2023-04-07	Abstract
Review of Major Social Determinants of Health in Schizophrenia-Spectrum Psychotic Disorders: III. Biology.	Dilip V Jeste, Dolores Malaspina, Kara Bagot, Deanna M Barch, Steve Cole, Faith Dickerson, Amanda Dilmore, Charles L Ford, Nicole R Karcher, Joan Luby, Tarek Rajji, Adrián A Pinto-Tomas, Larry J Young	Schizophrenia Bulletin	2023-04-06	Abstract
Effects of a ketogenic and low-fat diet on the human metabolome, microbiome, and foodome in adults at risk for Alzheimer's disease.	Amanda Hazel Dilmore, Cameron Martino, Bryan J Neth, Kiana A West, Jasmine Zemlin, Gibraan Rahman, Morgan Panitchpakdi, Michael J Meehan, Kelly C Weldon, Colette Blach, Leyla Schimmel, Rima Kaddurah-Daouk, Pieter C Dorrestein, Rob Knight, Suzanne Craft,	Alzheimer's & Dementia : The Journal Of The Alzheimer's Association	2023-04-05	Abstract
The Escherichia coli Fur pan-regulon has few conserved but many unique regulatory targets.	Ye Gao, Ina Bang, Yara Seif, Donghyuk Kim, Bernhard O Palsson	Nucleic Acids Research	2023-04-05	Abstract
Evolving approaches to profiling the microbiome in skin disease.	Yang Chen, Rob Knight, Richard L Gallo	Frontiers In Immunology	2023-04-04	Abstract
Whole-genome sequences from wild-type and laboratory-evolved strains define the alleleome and establish its hallmarks.	Edward Alexander Catoiu, Patrick Phaneuf, Jonathan Monk, Bernhard O Palsson	Proceedings Of The National Academy Of Sciences Of The United States Of America	2023-04-03	Abstract
Safety and Efficacy of Combined Tixagevimab and Cilgavimab Administered Intramuscularly or Intravenously in Nonhospitalized Patients With COVID-19: 2 Randomized Clinical Trials.	Rachel A Bender Ignacio, Kara W Chew, Carlee Moser, Judith S Currier, Joseph J Eron, Arzhang Cyrus Javan, Mark J Giganti, Evgenia Aga, Michael Gibbs, Hervé Tchouakam Kouekam, Eva Johnsson, Mark T Esser, Keila Hoover, Gene Neytman, Matthew Newell, Eric S Daar, William Fischer, Courtney V Fletcher, Jonathan Z Li, Alexander L Greninger, Robert W Coombs, Michael D Hughes, Davey Smith, David Alain Wohl,	JAMA Network Open	2023-04-03	Abstract
A model industrial workhorse: Bacillus subtilis strain 168 and its genome after a quarter of a century.	Erhard Bremer, Alexandra Calteau, Antoine Danchin, Colin Harwood, John D Helmann, Claudine Médigue, Bernhard O Palsson, Agnieszka Sekowska, David Vallenet, Abril Zuniga, Cristal Zuniga	Microbial Biotechnology	2023-04-01	Abstract
Transmissible SARS-CoV-2 variants with resistance to clinical protease inhibitors.	Seyed Arad Moghadasi, Emmanuel Heilmann, Ahmed Magdy Khalil, Christina Nnabuife, Fiona L Kearns, Chengjin Ye, Sofia N Moraes, Francesco Costacurta, Morgan A Esler, Hideki Aihara, Dorothee von Laer, Luis Martinez-Sobrido, Timothy Palzkill, Rommie E Amaro, Reuben S Harris	Science Advances	2023-03-29	Abstract
Global epidemiology of cirrhosis - aetiology, trends and predictions.	Daniel Q Huang, Norah A Terrault, Frank Tacke, Lise Lotte Gluud, Marco Arrese, Elisabetta Bugianesi, Rohit Loomba	Nature Reviews. Gastroenterology & Hepatology	2023-03-28	Abstract
The transcription factor Mef2d regulates B:T synapse-dependent GC-T differentiation and IL-21-mediated humoral immunity.	Ye-Ji Kim, Jeein Oh, Soohan Jung, Chan Johng Kim, Jinyong Choi, Yoon Kyung Jeon, Hyun Jik Kim, Ji-Won Kim, Chang-Hee Suh, Yoontae Lee, Sin-Hyeog Im, Shane Crotty, Youn Soo Choi	Science Immunology	2023-03-24	Abstract
Reconstructing the landscape of gut microbial species across 29,000 diverse individuals.	Igor Segota, Jeramie D Watrous, Edward D Kantz, Shriram Nallamshetty, Saumya Tiwari, Susan Cheng, Mohit Jain, Tao Long	Nucleic Acids Research	2023-03-24	Abstract
Mitigating the risk of antimalarial resistance via covalent dual-subunit inhibition of the Plasmodium proteasome.	Ioanna Deni, Barbara H Stokes, Kurt E Ward, Kate J Fairhurst, Charisse Flerida A Pasaje, Tomas Yeo, Shirin Akbar, Heekuk Park, Ryan Muir, Daniella S Bick, Wenhu Zhan, Hao Zhang, Yi Jing Liu, Caroline L Ng, Laura A Kirkman, Jehad Almaliti, Alexandra E Gould, Maëlle Duffey, Anthony J O'Donoghue, Anne-Catrin Uhlemann, Jacquin C Niles, Paula C A da Fonseca, William H Gerwick, Gang Lin, Matthew Bogyo, David A Fidock	Cell Chemical Biology	2023-03-22	Abstract
The Underappreciated Role of Secretory IgA in IBD.	Giorgos Bamias, Konstantina Kitsou, Jesús Rivera-Nieves	Inflammatory Bowel Diseases	2023-03-21	Abstract
Synchronization of the circadian clock to the environment tracked in real time.	Mingxu Fang, Archana G Chavan, Andy LiWang, Susan S Golden	Proceedings Of The National Academy Of Sciences Of The United States Of America	2023-03-20	Abstract
Integrative omics identifies conserved and pathogen-specific responses of sepsis-causing bacteria.	Andre Mu, William P Klare, Sarah L Baines, C N Ignatius Pang, Romain Guérillot, Nichaela Harbison-Price, Nadia Keller, Jonathan Wilksch, Nguyen Thi Khanh Nhu, Minh-Duy Phan, Bernhard Keller, Brunda Nijagal, Dedreia Tull, Saravanan Dayalan, Hwa Huat Charlie Chua, Dominik Skoneczny, Jason Koval, Abderrahman Hachani, Anup D Shah, Nitika Neha, Snehal Jadhav, Sally R Partridge, Amanda J Cork, Kate Peters, Olivia Bertolla, Stephan Brouwer, Steven J Hancock, Laura Álvarez-Fraga, David M P De Oliveira, Brian Forde, Ashleigh Dale, Warasinee Mujchariyakul, Calum J Walsh, Ian Monk, Anna Fitzgerald, Mabel Lum, Carolina Correa-Ospina, Piklu Roy Chowdhury, Robert G Parton, James De Voss, James Beckett, Francois Monty, Jessica McKinnon, Xiaomin Song, John R Stephen, Marie Everest, Matt I Bellgard, Matthew Tinning, Michael Leeming, Dianna Hocking, Leila Jebeli, Nancy Wang, Nouri Ben Zakour, Serhat A Yasar, Stefano Vecchiarelli, Tonia Russell, Thiri Zaw, Tyrone Chen, Don Teng, Zena Kassir, Trevor Lithgow, Adam Jenney, Jason N Cole, Victor Nizet, Tania C Sorrell, Anton Y Peleg, David L Paterson, Scott A Beatson, Jemma Wu, Mark P Molloy, Anna E Syme, Robert J A Goode, Adam A Hunter, Grahame Bowland, Nicholas P West, Marc R Wilkins, Steven P Djordjevic, Mark R Davies, Torsten Seemann, Benjamin P Howden, Dana Pascovici, Sonika Tyagi, Ralf B Schittenhelm, David P De Souza, Malcolm J McConville, Jonathan R Iredell, Stuart J Cordwell, Richard A Strugnell, Timothy P Stinear, Mark A Schembri, Mark J Walker	Nature Communications	2023-03-18	Abstract
The Evolution of Assessing Central Nervous System Complications in Human Immunodeficiency Virus: Where Do We Go From Here?	Roger C McIntosh, Uraina S Clark, Mariana Cherner, Lucette A Cysique, Robert K Heaton, Jules Levin, Robert H Remien, April Thames, David J Moore, Leah H Rubin	The Journal Of Infectious Diseases	2023-03-17	Abstract
Optimization of nutrient utilization efficiency and productivity for algal cultures under light and dark cycles using genome-scale model process control.	Chien-Ting Li, Richard Eng, Cristal Zuniga, Kai-Wen Huang, Yiqun Chen, Karsten Zengler, Michael J Betenbaugh	NPJ Systems Biology And Applications	2023-03-15	Abstract
Characterization of SARS-CoV-2 Distribution and Microbial Succession in a Clinical Microbiology Testing Facility during the SARS-CoV-2 Pandemic.	Govind Prasad Sah, Grace Kovalick, Jessica Chopyk, Peiting Kuo, Lina Huang, Pooja Ghatbale, Promi Das, Susan Realegeno, Rob Knight, Jack A Gilbert, David T Pride	Microbiology Spectrum	2023-03-14	Abstract
Bile salt hydrolases shape the bile acid landscape and restrict Clostridioides difficile growth in the murine gut.	Matthew H Foley, Morgan E Walker, Allison K Stewart, Sarah O'Flaherty, Emily C Gentry, Shakshi Patel, Violet V Beaty, Garrison Allen, Meichen Pan, Joshua B Simpson, Caroline Perkins, Molly E Vanhoy, Michael K Dougherty, Sarah K McGill, Ajay S Gulati, Pieter C Dorrestein, Erin S Baker, Matthew R Redinbo, Rodolphe Barrangou, Casey M Theriot	Nature Microbiology	2023-03-13	Abstract
Effectiveness of BNT162b2 and CoronaVac vaccines against omicron in children aged 5 to 11 years.	Eduardo A Oliveira, Maria Christina L Oliveira, Ana Cristina Simões E Silva, Enrico A Colosimo, Robert H Mak, Mariana A Vasconcelos, Ludmila R Silva, Daniella B Martelli, Clara C Pinhati, Hercílio Martelli-Júnior	World Journal Of Pediatrics : WJP	2023-03-13	Abstract
Shared genetic architecture between attention-deficit/hyperactivity disorder and lifespan.	Laura Vilar-Ribó, Judit Cabana-Domínguez, Lourdes Martorell, Josep Antoni Ramos-Quiroga, Sandra Sanchez-Roige, Abraham A Palmer, Elisabet Vilella, Marta Ribasés, Gerard Muntané, María Soler Artigas	Neuropsychopharmacology : Official Publication Of The American College Of Neuropsychopharmacology	2023-03-11	Abstract
Association of the gut microbiome with kidney function and damage in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL).	Brandilyn A Peters, Qibin Qi, Mykhaylo Usyk, Martha L Daviglus, Jianwen Cai, Nora Franceschini, James P Lash, Marc D Gellman, Bing Yu, Eric Boerwinkle, Rob Knight, Robert D Burk, Robert C Kaplan	Gut Microbes	2023-03-08	Abstract
Captive and urban environments are associated with distinct gut microbiota in deer mice ().	Jessica Diaz, Kent H Redford, Aspen T Reese	Biology Letters	2023-03-08	Abstract
Engineered bacteria producing aryl-hydrocarbon receptor agonists protect against ethanol-induced liver disease in mice.	Tetsuya Kouno, Suling Zeng, Yanhan Wang, Yi Duan, Sonja Lang, Bei Gao, Phillipp Hartmann, Noemí Cabré, Cristina Llorente, Chloé Galbert, Patrick Emond, Harry Sokol, Michael James, Chun Cheih Chao, Jian-Rong Gao, Mylene Perreault, David L Hava, Bernd Schnabl	Alcoholism, Clinical And Experimental Research	2023-03-05	Abstract
Plasma metabolites with mechanistic and clinical links to the neurovascular disease cavernous angioma.	Abhinav Srinath, Bingqing Xie, Ying Li, Je Yeong Sone, Sharbel Romanos, Chang Chen, Anukriti Sharma, Sean Polster, Pieter C Dorrestein, Kelly C Weldon, Dorothy DeBiasse, Thomas Moore, Rhonda Lightle, Janne Koskimäki, Dongdong Zhang, Agnieszka Stadnik, Kristina Piedad, Matthew Hagan, Abdallah Shkoukani, Julián Carrión-Penagos, Dehua Bi, Le Shen, Robert Shenkar, Yuan Ji, Ashley Sidebottom, Eric Pamer, Jack A Gilbert, Mark L Kahn, Mark D'Souza, Dinanath Sulakhe, Issam A Awad, Romuald Girard	Communications Medicine	2023-03-03	Abstract
The Combined Effects of Cannabis, Methamphetamine, and HIV on Neurocognition.	Jeffrey M Rogers, Jennifer E Iudicello, Maria Cecilia G Marcondes, Erin E Morgan, Mariana Cherner, Ronald J Ellis, Scott L Letendre, Robert K Heaton, Igor Grant	Viruses	2023-03-03	Abstract
Bacterial and Chemical Evidence of Coastal Water Pollution from the Tijuana River in Sea Spray Aerosol.	Matthew A Pendergraft, Pedro Belda-Ferre, Daniel Petras, Clare K Morris, Brock A Mitts, Allegra T Aron, MacKenzie Bryant, Tara Schwartz, Gail Ackermann, Greg Humphrey, Ethan Kaandorp, Pieter C Dorrestein, Rob Knight, Kimberly A Prather	Environmental Science & Technology	2023-03-02	Abstract
Cell specialization in cyanobacterial biofilm development revealed by expression of a cell-surface and extracellular matrix protein.	Alona Frenkel, Eli Zecharia, Daniel Gómez-Pérez, Eleonora Sendersky, Yevgeni Yegorov, Avi Jacob, Jennifer I C Benichou, York-Dieter Stierhof, Rami Parnasa, Susan S Golden, Eric Kemen, Rakefet Schwarz	NPJ Biofilms And Microbiomes	2023-03-02	Abstract
Piezophilic Phenotype Is Growth Condition Dependent and Correlated with the Regulation of Two Sets of ATPase in Deep-Sea Piezophilic Bacterium SS9.	An-Qi Li, Wei-Jia Zhang, Xue-Gong Li, Xu-Chong Bao, Xiao-Qing Qi, Long-Fei Wu, Douglas H Bartlett	Microorganisms	2023-03-02	Abstract
Identification of CD8+ T cell - immune cell communications in ileal Crohn's disease.	Han G Duong, Eunice J Choi, Paul Hsu, Natalie R Chiang, Shefali A Patel, Jocelyn G Olvera, Yi Chia Liu, Yun Hsuan Lin, Priscilla Yao, William H Wong, Cynthia S Indralingam, Matthew S Tsai, Brigid S Boland, Wei Wang, John T Chang	Clinical And Translational Gastroenterology	2023-03-01	Abstract
Complete Genome Sequence of an Escherichia coli Strain Isolated from Laboratory Mouse Stool for Use as a Chassis for Transgene Delivery to the Murine Microbiome.	Nicole Siguenza, Baylee J Russell, R Alexander Richter, Amir Zarrinpar	Microbiology Resource Announcements	2023-03-01	Abstract
Marinobazzanan, a Bazzanane-Type Sesquiterpenoid, Suppresses the Cell Motility and Tumorigenesis in Cancer Cells.	Sultan Pulat, Prima F Hillman, Sojeong Kim, Ratnakar N Asolkar, Haerin Kim, Rui Zhou, İsa Taş, Chathurika D B Gamage, Mücahit Varlı, So-Yeon Park, Sung Chul Park, Inho Yang, Jongheon Shin, Dong-Chan Oh, Hangun Kim, Sang-Jip Nam, William Fenical	Marine Drugs	2023-02-25	Abstract
The Gut Microbial Bile Acid Modulation and its Relevance to Digestive Health and Diseases.	Kelly A Fogelson, Pieter C Dorrestein, Amir Zarrinpar, Rob Knight	Gastroenterology	2023-02-23	Abstract
Immunoglobulin Y antibodies against cytolysin reduce ethanol-induced liver disease in mice.	Noemí Cabré, Phillipp Hartmann, Cristina Llorente, Tetsuya Kouno, Yanhan Wang, Suling Zeng, Hyun Young Kim, Xinlian Zhang, Tatiana Kisseleva, Subramanian Iyer, Sirisha Kudumala, Bernd Schnabl	Hepatology (Baltimore, Md.)	2023-02-23	Abstract
Diet Quality and the Fecal Microbiota in Adults in the American Gut Project.	Alexis D Baldeon, Daniel McDonald, Antonio Gonzalez, Rob Knight, Hannah D Holscher	The Journal Of Nutrition	2023-02-22	Abstract
Oral mucosal breaks trigger anti-citrullinated bacterial and human protein antibody responses in rheumatoid arthritis.	R Camille Brewer, Tobias V Lanz, Caryn R Hale, Gregory D Sepich-Poore, Cameron Martino, Austin D Swafford, Thomas S Carroll, Sarah Kongpachith, Lisa K Blum, Serra E Elliott, Nathalie E Blachere, Salina Parveen, John Fak, Vicky Yao, Olga Troyanskaya, Mayu O Frank, Michelle S Bloom, Shaghayegh Jahanbani, Alejandro M Gomez, Radhika Iyer, Nitya S Ramadoss, Orr Sharpe, Sangeetha Chandrasekaran, Lindsay B Kelmenson, Qian Wang, Heidi Wong, Holly L Torres, Mark Wiesen, Dana T Graves, Kevin D Deane, V Michael Holers, Rob Knight, Robert B Darnell, William H Robinson, Dana E Orange	Science Translational Medicine	2023-02-22	Abstract
Determination of the Chromatin Openness in Bacterial Genomes.	Mahmoud M Al-Bassam, Karsten Zengler	Methods In Molecular Biology (Clifton, N.J.)	2023-02-22	Abstract
Terpene biosynthesis in marine sponge animals.	Kayla Wilson, Tristan de Rond, Immo Burkhardt, Taylor S Steele, Rebecca J B Schäfer, Sheila Podell, Eric E Allen, Bradley S Moore	Proceedings Of The National Academy Of Sciences Of The United States Of America	2023-02-21	Abstract
Symptom and Viral Rebound in Untreated SARS-CoV-2 Infection.	Rinki Deo, Manish C Choudhary, Carlee Moser, Justin Ritz, Eric S Daar, David A Wohl, Alexander L Greninger, Joseph J Eron, Judith S Currier, Michael D Hughes, Davey M Smith, Kara W Chew, Jonathan Z Li,	Annals Of Internal Medicine	2023-02-21	Abstract
Differences in Bacterial Translocation and Liver Injury in Ethanol Versus Diet-Induced Liver Disease.	Cynthia L Hsu, Yanhan Wang, Yi Duan, Huikuan Chu, Phillipp Hartmann, Cristina Llorente, Rongrong Zhou, Bernd Schnabl	Digestive Diseases And Sciences	2023-02-20	Abstract
Microbiome response in an urban river system is dominated by seasonality over wastewater treatment upgrades.	Sho M Kodera, Anukriti Sharma, Cameron Martino, Melissa Dsouza, Mark Grippo, Holly L Lutz, Rob Knight, Jack A Gilbert, Cristina Negri, Sarah M Allard	Environmental Microbiome	2023-02-19	Abstract
Broadly neutralizing anti-S2 antibodies protect against all three human betacoronaviruses that cause deadly disease.	Panpan Zhou, Ge Song, Hejun Liu, Meng Yuan, Wan-Ting He, Nathan Beutler, Xueyong Zhu, Longping V Tse, David R Martinez, Alexandra Schäfer, Fabio Anzanello, Peter Yong, Linghang Peng, Katharina Dueker, Rami Musharrafieh, Sean Callaghan, Tazio Capozzola, Oliver Limbo, Mara Parren, Elijah Garcia, Stephen A Rawlings, Davey M Smith, David Nemazee, Joseph G Jardine, Yana Safonova, Bryan Briney, Thomas F Rogers, Ian A Wilson, Ralph S Baric, Lisa E Gralinski, Dennis R Burton, Raiees Andrabi	Immunity	2023-02-16	Abstract
Using machine learning to improve our understanding of COVID-19 infection in children.	Shraddha Piparia, Andrew Defante, Kelan Tantisira, Julie Ryu	PloS One	2023-02-15	Abstract
APOBEC3A Catalytic Inactivity Mutation Induces Tertiary Structure Destabilization.	Katherine F M Jones, Mohamed Shehata, Michael A Carpenter, Rommie E Amaro, Daniel A Harki	ACS Medicinal Chemistry Letters	2023-02-14	Abstract
Metagenome-Assembled Genomes from Murine Fecal Microbiomes Dominated by Uncharacterized Bacteria.	Kiarash Rastegar, Scott T Kelley, Varykina G Thackray	Microbiology Resource Announcements	2023-02-13	Abstract
Diverse Microbial Hot Spring Mat Communities at Black Canyon of the Colorado River.	Ivan J Moreno, Bianca Brahamsha, Mohamed S Donia, Brian Palenik	Microbial Ecology	2023-02-09	Abstract
Man vs Microbes - The Race of the Century.	Ericka Anderson, Bipin Nair, Victor Nizet, Geetha Kumar	Journal Of Medical Microbiology	2023-02-07	Abstract
Malice in Chains.	Joshua Osowicki, Victor Nizet	The Journal Of Infectious Diseases	2023-02-07	Abstract
T Cell Responses to SARS-CoV-2.	Alessandro Sette, John Sidney, Shane Crotty	Annual Review Of Immunology	2023-02-07	Abstract
Laboratory evolution reveals general and specific tolerance mechanisms for commodity chemicals.	Rebecca M Lennen, Hyun Gyu Lim, Kristian Jensen, Elsayed T Mohammed, Patrick V Phaneuf, Myung Hyun Noh, Sailesh Malla, Rosa A Börner, Ksenia Chekina, Emre Özdemir, Ida Bonde, Anna Koza, Jérôme Maury, Lasse E Pedersen, Lars Y Schöning, Nikolaus Sonnenschein, Bernhard O Palsson, Alex T Nielsen, Morten O A Sommer, Markus J Herrgård, Adam M Feist	Metabolic Engineering	2023-02-03	Abstract
The Molecular Effect of Wearing Silver-Threaded Clothing on the Human Skin.	Alexey V Melnik, Chris Callewaert, Kathleen Dorrestein, Rosie Broadhead, Jeremiah J Minich, Madeleine Ernst, Greg Humphrey, Gail Ackermann, Rob Gathercole, Alexander A Aksenov, Rob Knight, Pieter C Dorrestein	MSystems	2023-02-01	Abstract
Acute and Postacute COVID-19 Outcomes Among Immunologically Naive Adults During Delta vs Omicron Waves.	Margaret K Doll, Alpana Waghmare, Antje Heit, Brianna Levenson Shakoor, Louise E Kimball, Nina Ozbek, Rachel L Blazevic, Larry Mose, Jim Boonyaratanakornkit, Terry L Stevens-Ayers, Kevin Cornell, Benjamin D Sheppard, Emma Hampson, Faria Sharmin, Benjamin Goodwin, Jennifer M Dan, Tom Archie, Terry O'Connor, David Heckerman, Frank Schmitz, Michael Boeckh, Shane Crotty	JAMA Network Open	2023-02-01	Abstract
A Camptothetin Analog, Topotecan, Promotes HIV Latency via Interference with HIV Transcription and RNA Splicing.	Amey Mukim, Davey M Smith, Savitha Deshmukh, Andrew A Qazi, Nadejda Beliakova-Bethell	Journal Of Virology	2023-01-31	Abstract
Early transcriptional and epigenetic divergence of CD8+ T cells responding to acute versus chronic infection.	Lauren K Quezada, Wenhao Jin, Yi Chia Liu, Eleanor S Kim, Zhaoren He, Cynthia S Indralingam, Tiffani Tysl, Lara Labarta-Bajo, Ellen J Wehrens, Yeara Jo, Katelynn R Kazane, Christopher Hattori, Elina I Zuniga, Gene W Yeo, John T Chang	PLoS Biology	2023-01-30	Abstract
Author Correction: Long-primed germinal centres with enduring affinity maturation and clonal migration.	Jeong Hyun Lee, Henry J Sutton, Christopher A Cottrell, Ivy Phung, Gabriel Ozorowski, Leigh M Sewall, Rebecca Nedellec, Catherine Nakao, Murillo Silva, Sara T Richey, Jonathan L Torres, Wen-Hsin Lee, Erik Georgeson, Michael Kubitz, Sam Hodges, Tina-Marie Mullen, Yumiko Adachi, Kimberly M Cirelli, Amitinder Kaur, Carolina Allers, Marissa Fahlberg, Brooke F Grasperge, Jason P Dufour, Faith Schiro, Pyone P Aye, Oleksandr Kalyuzhniy, Alessia Liguori, Diane G Carnathan, Guido Silvestri, Xiaoying Shen, David C Montefiori, Ronald S Veazey, Andrew B Ward, Lars Hangartner, Dennis R Burton, Darrell J Irvine, William R Schief, Shane Crotty	Nature	2023-01-30	Abstract
Enhancer-instructed epigenetic landscape and chromatin compartmentalization dictate a primary antibody repertoire protective against specific bacterial pathogens.	E Mauricio Barajas-Mora, Lindsay Lee, Hanbin Lu, J Andrés Valderrama, Elisabet Bjanes, Victor Nizet, Ann J Feeney, Ming Hu, Cornelis Murre	Nature Immunology	2023-01-30	Abstract
Malassezia restricta promotes alcohol-induced liver injury.	Suling Zeng, Phillipp Hartmann, Minji Park, Yi Duan, Sonja Lang, Cristina Llorente, Yanhan Wang, Noemí Cabré, Derrick E Fouts, Petra Bacher, Won Hee Jung, Peter Stärkel, Bernd Schnabl	Hepatology Communications	2023-01-27	Abstract
Insulin-regulated serine and lipid metabolism drive peripheral neuropathy.	Michal K Handzlik, Jivani M Gengatharan, Katie E Frizzi, Grace H McGregor, Cameron Martino, Gibraan Rahman, Antonio Gonzalez, Ana M Moreno, Courtney R Green, Lucie S Guernsey, Terry Lin, Patrick Tseng, Yoichiro Ideguchi, Regis J Fallon, Amandine Chaix, Satchidananda Panda, Prashant Mali, Martina Wallace, Rob Knight, Marin L Gantner, Nigel A Calcutt, Christian M Metallo	Nature	2023-01-25	Abstract
Deep-learning optimized DEOCSU suite provides an iterable pipeline for accurate ChIP-exo peak calling.	Ina Bang, Sang-Mok Lee, Seojoung Park, Joon Young Park, Linh Khanh Nong, Ye Gao, Bernhard O Palsson, Donghyuk Kim	Briefings In Bioinformatics	2023-01-25	Abstract
Integrated Multi-Cohort Analysis of the Parkinson's Disease Gut Metagenome.	Joseph C Boktor, Gil Sharon, Leo A Verhagen Metman, Deborah A Hall, Phillip A Engen, Zoe Zreloff, Daniel J Hakim, John W Bostick, James Ousey, Danielle Lange, Gregory Humphrey, Gail Ackermann, Martha Carlin, Rob Knight, Ali Keshavarzian, Sarkis K Mazmanian	Movement Disorders : Official Journal Of The Movement Disorder Society	2023-01-24	Abstract
Hepatic pIgR-mediated secretion of IgA limits bacterial translocation and prevents ethanol-induced liver disease in mice.	Tim Hendrikx, Sonja Lang, Dragana Rajcic, Yanhan Wang, Sara McArdle, Kenneth Kim, Zbigniew Mikulski, Bernd Schnabl	Gut	2023-01-23	Abstract
Comprehensive evaluation of shotgun metagenomics, amplicon sequencing, and harmonization of these platforms for epidemiological studies.	Mykhaylo Usyk, Brandilyn A Peters, Smruthi Karthikeyan, Daniel McDonald, Christopher C Sollecito, Yoshiki Vazquez-Baeza, Justin P Shaffer, Marc D Gellman, Gregory A Talavera, Martha L Daviglus, Bharat Thyagarajan, Rob Knight, Qibin Qi, Robert Kaplan, Robert D Burk	Cell Reports Methods	2023-01-23	Abstract
Safety and Efficacy of Ceftolozane/Tazobactam Versus Meropenem in Neonates and Children With Complicated Urinary Tract Infection, Including Pyelonephritis: A Phase 2, Randomized Clinical Trial.	Emmanuel Roilides, Negar Ashouri, John S Bradley, Matthew G Johnson, Julia Lonchar, Feng-Hsiu Su, Jennifer A Huntington, Myra W Popejoy, Mekki Bensaci, Carisa De Anda, Elizabeth G Rhee, Christopher J Bruno	The Pediatric Infectious Disease Journal	2023-01-23	Abstract
Predictors of COVID-19 vaccine uptake among people who inject drugs.	Steffanie A Strathdee, Daniela Abramovitz, Carlos F Vera, Irina Artamonova, Thomas L Patterson, Davey M Smith, Antoine Chaillon, Angela R Bazzi	Vaccine	2023-01-23	Abstract
A tissue atlas of ulcerative colitis revealing evidence of sex-dependent differences in disease-driving inflammatory cell types and resistance to TNF inhibitor therapy.	Aaron T Mayer, Derek R Holman, Anav Sood, Utkarsh Tandon, Salil S Bhate, Sunil Bodapati, Graham L Barlow, Jeff Chang, Sarah Black, Erica C Crenshaw, Alexander N Koron, Sarah E Streett, Sanjiv S Gambhir, William J Sandborn, Brigid S Boland, Trevor Hastie, Robert Tibshirani, John T Chang, Garry P Nolan, Christian M Schürch, Stephan Rogalla	Science Advances	2023-01-20	Abstract
Model-driven experimental design workflow expands understanding of regulatory role of Nac in .	Joon Young Park, Sang-Mok Lee, Ali Ebrahim, Zoe K Scott-Nevros, Jaehyung Kim, Laurence Yang, Anand Sastry, Sang Woo Seo, Bernhard O Palsson, Donghyuk Kim	NAR Genomics And Bioinformatics	2023-01-20	Abstract
Detection of Bacteria in Bladder Mucosa of Adult Females.	Alan J Wolfe, David J Rademacher, Carine R Mores, Robert J Evans, Tyler Overholt, Thomas Halverson, Roberto Limeira, Catherine Matthews, Gopal Badlani, Linda Brubaker, Stephen J Walker	The Journal Of Urology	2023-01-19	Abstract
Recognizing the Contribution of Data: The Use of Companion Articles To Highlight Novel Resources in Microbiology Research.	Jack A Gilbert, Irene L G Newton, Gemma Reguera	MSystems	2023-01-19	Abstract
Recognizing the Contribution of Data: The Use of Companion Articles To Highlight Novel Resources in Microbiology Research.	Jack A Gilbert, Irene L G Newton, Gemma Reguera	Applied And Environmental Microbiology	2023-01-19	Abstract
Recognizing the Contribution of Data: The Use of Companion Articles To Highlight Novel Resources in Microbiology Research.	Jack A Gilbert, Irene L G Newton, Gemma Reguera	Microbiology Resource Announcements	2023-01-19	Abstract
Association of subjective and objective measures of sleep with gut microbiota composition and diversity in older men: The Osteoporotic Fractures in Men (MrOS) study.	Mehrbod Estaki, Lisa Langsetmo, Michelle Shardell, Anna Mischel, Lingjing Jiang, Yuan Zhong, Christopher Kaufmann, Rob Knight, Katie Stone, Deborah Kado	The Journals Of Gerontology. Series A, Biological Sciences And Medical Sciences	2023-01-19	Abstract
Ablation of Adar1 in myeloid cells imprints a global antiviral state in the lung and heightens early immunity against SARS-CoV-2.	Julia Z Adamska, Rohit Verma, Shakti Gupta, Thomas Hagan, Florian Wimmers, Katharine Floyd, Qin Li, Erika V Valore, Yanli Wang, Meera Trisal, José G Vilches-Moure, Shankar Subramaniam, Carl R Walkley, Mehul S Suthar, Jin Billy Li, Bali Pulendran	Cell Reports	2023-01-17	Abstract
Cataloging natural sialic acids and other nonulosonic acids (NulOs), and their representation using the Symbol Nomenclature for Glycans.	Amanda L Lewis, Philip Toukach, Evan Bolton, Xi Chen, Martin Frank, Thomas Lütteke, Yuriy Knirel, Ian Schoenhofen, Ajit Varki, Evgeny Vinogradov, Robert J Woods, Natasha Zachara, Jian Zhang, Johannis P Kamerling, Sriram Neelamegham,	Glycobiology	2023-01-15	Abstract
Stability of the fecal and oral microbiome over two years at -80°C for multiple collection methods.	Semi Zouiouich, Doratha A Byrd, Xing Hua, Smriti Karwa, Yunhu Wan, Jianxin Shi, Gregory C Humphrey, Gail L Ackermann, Rob Knight, Christian C Abnet, Emily Vogtmann, Rashmi Sinha	Cancer Epidemiology, Biomarkers & Prevention : A Publication Of The American Association For Cancer Research, Cosponsored By The American Society Of Preventive Oncology	2023-01-13	Abstract
Any alcohol use in NAFLD patients is associated with significant changes to the intestinal virome.	Cynthia L Hsu, Sonja Lang, Münevver Demir, Derrick E Fouts, Peter Stärkel, Bernd Schnabl	Hepatology (Baltimore, Md.)	2023-01-13	Abstract
Genomic and Spectroscopic Signature-Based Discovery of Natural Macrolactams.	Yern-Hyerk Shin, Ji Hyeon Im, Ilnam Kang, Eunji Kim, Sung Chul Jang, Eunji Cho, Daniel Shin, Sunghoon Hwang, Young Eun Du, Thanh-Hau Huynh, Keebeom Ko, Yoon-Joo Ko, Sang-Jip Nam, Takayoshi Awakawa, Jeeyeon Lee, Suckchang Hong, Ikuro Abe, Bradley S Moore, William Fenical, Yeo Joon Yoon, Jang-Cheon Cho, Sang Kook Lee, Ki-Bong Oh, Dong-Chan Oh	Journal Of The American Chemical Society	2023-01-12	Abstract
Longitudinal, Multi-Platform Metagenomics Yields a High-Quality Genomic Catalog and Guides an Model for Cheese Communities.	Christina C Saak, Emily C Pierce, Cong B Dinh, Daniel Portik, Richard Hall, Meredith Ashby, Rachel J Dutton	MSystems	2023-01-09	Abstract
Comprehensive whole genome sequencing with hybrid assembly of multi-drug resistant isolate causing cerebral abscess.	Monika Kumaraswamy, Alison Coady, Richard Szubin, Thomas Cs Martin, Bernhard Palsson, Victor Nizet, Jonathan M Monk	Current Research In Microbial Sciences	2023-01-09	Abstract
Interactions between perceived stress and microbial-host immune components: two demographically and geographically distinct pregnancy cohorts.	Beatriz Peñalver Bernabé, Pauline M Maki, Janet L Cunningham, Tory Eisenlohr-Moul, Lisa Tussing-Humphreys, Ian M Carroll, Samantha Meltzer-Brody, Jack A Gilbert, Mary Kimmel	Translational Psychiatry	2023-01-06	Abstract
Stability, robustness, and containment: preparing synthetic biology for real-world deployment.	Shalni Kumar, Jeff Hasty	Current Opinion In Biotechnology	2023-01-06	Abstract
Residential green environments are associated with human milk oligosaccharide diversity and composition.	Mirkka Lahdenperä, Laura Galante, Carlos Gonzales-Inca, Jussi Vahtera, Jaana Pentti, Samuli Rautava, Niina Käyhkö, Chloe Yonemitsu, Julia Gupta, Lars Bode, Hanna Lagström	Scientific Reports	2023-01-05	Abstract
Wastewater surveillance for public health.	Joshua I Levy, Kristian G Andersen, Rob Knight, Smruthi Karthikeyan	Science (New York, N.Y.)	2023-01-05	Abstract
Natural killer cells for antiviral therapy.	Davey M Smith, Jolie R Schafer, Brian Tullius, Laura Witkam, Silke Paust	Science Translational Medicine	2023-01-04	Abstract
Can a mucosal microbiota signature predict disease severity, survival, and disease recurrence in PSC?	Phillipp Hartmann, Bernd Schnabl	Hepatology (Baltimore, Md.)	2023-01-03	Abstract
Mutualism-enhancing mutations dominate early adaptation in a two-species microbial community.	Sandeep Venkataram, Huan-Yu Kuo, Erik F Y Hom, Sergey Kryazhimskiy	Nature Ecology & Evolution	2023-01-02	Abstract
Cocirculation and replacement of SARS-CoV-2 variants in crowded settings and marginalized populations along the US-Mexico border.	Antoine Chaillon, Ietza Bojorquez, Jaime Sepúlveda, Alicia Yolanda Harvey-Vera, M Gudelia Rangel, Britt Skaathun, Sanjay R Mehta, Caroline Ignacio, Magali Porrachia, Davey M Smith, Steffanie A Strathdee	Salud Publica De Mexico	2023-01-02	Abstract
Higher-order interactions shape microbial interactions as microbial community complexity increases.	Manon A Morin, Anneliese J Morrison, Michael J Harms, Rachel J Dutton	Scientific Reports	2022-12-31	Abstract
Antiviral therapy use and related outcomes in patients with cancer and viral infections: results from SWOG S1204.	Jessica P Hwang, Kathryn B Arnold, Joseph M Unger, Rashmi Chugh, Monica A Tincopa, Rohit Loomba, Dawn Hershman, Scott D Ramsey	Supportive Care In Cancer : Official Journal Of The Multinational Association Of Supportive Care In Cancer	2022-12-31	Abstract
Mitigating Infectious morbidity and Growth deficits in HIV-exposed uninfected infanTs with human Milk Oligosaccharide (MIGH-T MO): a randomised trial protocol.	Rupak Shivakoti, Amy L Slogrove, Barbara Laughton, Mehr Shafiq, Elisma Schoeman, Richard H Glashoff, Cheng-Shiun Leu, Shuang Wang, Lars Bode, Grace Aldrovandi, Louise Kuhn	BMJ Open	2022-12-30	Abstract
High-quality genome-scale metabolic network reconstruction of probiotic bacterium Escherichia coli Nissle 1917.	Max van 't Hof, Omkar S Mohite, Jonathan M Monk, Tilmann Weber, Bernhard O Palsson, Morten O A Sommer	BMC Bioinformatics	2022-12-30	Abstract
Breastfeeding enrichment of B. longum subsp. infantis mitigates the effect of antibiotics on the microbiota and childhood asthma risk.	Darlene L Y Dai, Charisse Petersen, Courtney Hoskinson, Kate L Del Bel, Allan B Becker, Theo J Moraes, Piushkumar J Mandhane, B Brett Finlay, Elinor Simons, Anita L Kozyrskyj, David M Patrick, Padmaja Subbarao, Lars Bode, Meghan B Azad, Stuart E Turvey	Med (New York, N.Y.)	2022-12-29	Abstract
The gut microbiome is a significant risk factor for future chronic lung disease.	Yang Liu, Shu Mei Teo, Guillaume Meric, Howard H F Tang, Qiyun Zhu, Jon G Sanders, Yoshiki Vazquez-Baeza, Karin Verspoor, Ville A Vartiainen, Pekka Jousilahti, Leo Lahti, Teemu Niiranen, Aki S Havulinna, Rob Knight, Veikko Salomaa, Michael Inouye	The Journal Of Allergy And Clinical Immunology	2022-12-29	Abstract
SREBP signaling is essential for effective B cell responses.	Wei Luo, Julia Z Adamska, Chunfeng Li, Rohit Verma, Qing Liu, Thomas Hagan, Florian Wimmers, Shakti Gupta, Yupeng Feng, Wenxia Jiang, Jiehao Zhou, Erika Valore, Yanli Wang, Meera Trisal, Shankar Subramaniam, Timothy F Osborne, Bali Pulendran	Nature Immunology	2022-12-28	Abstract
In vitro Activity of Ceftaroline Against an International Collection of Kingella kingae Isolates Recovered From Carriers and Invasive Infections.	Joshua M Maher, Rodrigo E Mendes, Holly K Huynh, Eric A Porsch, Joseph W St Geme Iii, Pablo Yagupsky, John Bradley	The Pediatric Infectious Disease Journal	2022-12-28	Abstract
Safety and microbiological activity of phage therapy in persons with cystic fibrosis colonized with Pseudomonas aeruginosa: study protocol for a phase 1b/2, multicenter, randomized, double-blind, placebo-controlled trial.	Pranita D Tamma, Maria Souli, Michael Billard, Joseph Campbell, Douglas Conrad, Damon W Ellison, Beth Evans, Scott R Evans, Kerryl E Greenwood-Quaintance, Andrey A Filippov, Holly S Geres, Toshimitsu Hamasaki, Lauren Komarow, Mikeljon P Nikolich, Thomas P Lodise, Seema U Nayak, Carmelle Norice-Tra, Robin Patel, David Pride, Janie Russell, Daria Van Tyne, Henry F Chambers, Vance G FowlerJr, Robert T Schooley,	Trials	2022-12-28	Abstract
Quantifying (non)parallelism of gut microbial community change using multivariate vector analysis.	Andreas Härer, Diana J Rennison	Ecology And Evolution	2022-12-28	Abstract
Predicting stress response and improved protein overproduction in Bacillus subtilis.	Juan D Tibocha-Bonilla, Cristal Zuñiga, Asama Lekbua, Colton Lloyd, Kevin Rychel, Katie Short, Karsten Zengler	NPJ Systems Biology And Applications	2022-12-27	Abstract
The RISE FOR HEALTH study: Methods for in-person assessment and biospecimen collection.	Linda Brubaker, Julia Barthold, Colleen M Fitzgerald, Kimberly Kenton, Cora E Lewis, Jerry Lowder, Emily S Lukacz, Alayne Markland, Melanie Meister, Janis Miller, Elizabeth R Mueller, Kyle Rudser, Ariana L Smith, Diane K Newman,	Neurourology And Urodynamics	2022-12-27	Abstract
Minireview: Engineering evolution to reconfigure phenotypic traits in microbes for biotechnological applications.	Kangsan Kim, Minjeong Kang, Sang-Hyeok Cho, Eojin Yoo, Ui-Gi Kim, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho	Computational And Structural Biotechnology Journal	2022-12-24	Abstract
Association between inflammation, reward processing, and ibuprofen-induced increases of miR-23b in astrocyte-enriched extracellular vesicles: A randomized, placebo-controlled, double-blind, exploratory trial in healthy individuals.	Kaiping Burrows, Leandra K Figueroa-Hall, Ahlam M Alarbi, Jennifer L Stewart, Rayus Kuplicki, Chibing Tan, Bethany N Hannafon, Rajagopal Ramesh, Jonathan Savitz, Sahib Khalsa, T Kent Teague, Victoria B Risbrough, Martin P Paulus	Brain, Behavior, & Immunity - Health	2022-12-24	Abstract
SARS-CoV-2 spike conformation determines plasma neutralizing activity elicited by a wide panel of human vaccines.	John E Bowen, Young-Jun Park, Cameron Stewart, Jack T Brown, William K Sharkey, Alexandra C Walls, Anshu Joshi, Kaitlin R Sprouse, Matthew McCallum, M Alejandra Tortorici, Nicholas M Franko, Jennifer K Logue, Ignacio G Mazzitelli, Annalee W Nguyen, Rui P Silva, Yimin Huang, Jun Siong Low, Josipa Jerak, Sasha W Tiles, Kumail Ahmed, Asefa Shariq, Jennifer M Dan, Zeli Zhang, Daniela Weiskopf, Alessandro Sette, Gyorgy Snell, Christine M Posavad, Najeeha Talat Iqbal, Jorge Geffner, Alessandra Bandera, Andrea Gori, Federica Sallusto, Jennifer A Maynard, Shane Crotty, Wesley C Van Voorhis, Carlos Simmerling, Renata Grifantini, Helen Y Chu, Davide Corti, David Veesler	Science Immunology	2022-12-23	Abstract
Healthy dietary patterns are associated with the gut microbiome in the Hispanic Community Health Study/Study of Latinos.	Brandilyn A Peters, Jiaqian Xing, Guo-Chong Chen, Mykhaylo Usyk, Zheng Wang, Amanda C McClain, Bharat Thyagarajan, Martha L Daviglus, Daniela Sotres-Alvarez, Frank B Hu, Rob Knight, Robert D Burk, Robert C Kaplan, Qibin Qi	The American Journal Of Clinical Nutrition	2022-12-22	Abstract
Outer Membrane Vesicle-Coated Nanoparticle Vaccine Protects Against Pneumonia and Sepsis.	Elisabet Bjanes, Jiarong Zhou, Tariq Qayum, Nishta Krishnan, Raymond H Zurich, Nitasha D Menon, Alexandria Hoffman, Ronnie H Fang, Liangfang Zhang, Victor Nizet	Advanced Nanobiomed Research	2022-12-22	Abstract
Bamlanivimab therapy for acute COVID-19 does not blunt SARS-CoV-2-specific memory T cell responses.	Sydney I Ramirez, Alba Grifoni, Daniela Weiskopf, Urvi M Parikh, Amy Heaps, Farhoud Faraji, Scott F Sieg, Justin Ritz, Carlee Moser, Joseph J Eron, Judith S Currier, Paul Klekotka, Alessandro Sette, David A Wohl, Eric S Daar, Michael D Hughes, Kara W Chew, Davey M Smith, Shane Crotty,	JCI Insight	2022-12-22	Abstract
Fungal infections and the fungal microbiome in hepatobiliary disorders.	Phillipp Hartmann, Bernd Schnabl	Journal Of Hepatology	2022-12-21	Abstract
The Chromatin Regulator Mll1 Supports T Follicular Helper Cell Differentiation by Controlling Expression of Bcl6, LEF-1, and TCF-1.	Simon Bélanger, Sonya Haupt, Caterina E Faliti, Adam Getzler, Jinyong Choi, Huitian Diao, Pabalu P Karunadharma, Nicholas A Bild, Matthew E Pipkin, Shane Crotty	Journal Of Immunology (Baltimore, Md. : 1950)	2022-12-20	Abstract
Conservation of Nematocida microsporidia gene expression and host response in Caenorhabditis nematodes.	Yin Chen Wan, Emily R Troemel, Aaron W Reinke	PloS One	2022-12-19	Abstract
ConCISE: Consensus Annotation Propagation of Ion Features in Untargeted Tandem Mass Spectrometry Combining Molecular Networking and Metabolite Structure Prediction.	Zachary A Quinlan, Irina Koester, Allegra T Aron, Daniel Petras, Lihini I Aluwihare, Pieter C Dorrestein, Craig E Nelson, Linda Wegley Kelly	Metabolites	2022-12-16	Abstract
Peptide Amphiphile Mediated Co-assembly for Nanoplasmonic Sensing.	Zhicheng Jin, Yi Li, Ke Li, Jiajing Zhou, Justin Yeung, Chuxuan Ling, Wonjun Yim, Tengyu He, Yong Cheng, Ming Xu, Matthew N Creyer, Yu-Ci Chang, Pavla Fajtová, Maurice Retout, Baiyan Qi, Shuzhou Li, Anthony J O'Donoghue, Jesse V Jokerst	Angewandte Chemie (International Ed. In English)	2022-12-15	Abstract
Exploring the value of a global gene drive project registry.	Riley I Taitingfong, Cynthia Triplett, Váleri N Vásquez, Ramya M Rajagopalan, Robyn Raban, Aaron Roberts, Gerard Terradas, Bridget Baumgartner, Claudia Emerson, Fred Gould, Fredros Okumu, Cynthia E Schairer, Hervé C Bossin, Leah Buchman, Karl J Campbell, Anna Clark, Jason Delborne, Kevin Esvelt, Joshua Fisher, Robert M Friedman, Gigi Gronvall, Nikos Gurfield, Elizabeth Heitman, Natalie Kofler, Todd Kuiken, Jennifer Kuzma, Pablo Manrique-Saide, John M Marshall, Michael Montague, Amy C Morrison, Chris C Opesen, Ryan Phelan, Antoinette Piaggio, Hector Quemada, Larisa Rudenko, Natéwindé Sawadogo, Robert Smith, Holly Tuten, Anika Ullah, Adam Vorsino, Nikolai Windbichler, Omar S Akbari, Kanya Long, James V Lavery, Sam Weiss Evans, Karen Tountas, Cinnamon S Bloss	Nature Biotechnology	2022-12-15	Abstract
Deep Dive into the Long Haul: Analysis of Symptom Clusters and Risk Factors for Post-Acute Sequelae of COVID-19 to Inform Clinical Care.	Nicole H Goldhaber, Jordan N Kohn, William Scott Ogan, Amy Sitapati, Christopher A Longhurst, Angela Wang, Susan Lee, Suzi Hong, Lucy E Horton	International Journal Of Environmental Research And Public Health	2022-12-15	Abstract
Potentially probiotic Limosilactobacillus reuteri from human milk strengthens the gut barrier in T84 cells and a murine enteroid model.	Jasia Anjum, Andrew Quach, Preedajit Wongkrasant, Shahid Nazir, Muhammad Tariq, Kim E Barrett, Arsalan Zaidi	Journal Of Applied Microbiology	2022-12-14	Abstract
Concurrent validity and reliability of at-home teleneuropsychological evaluations among people with and without HIV.	Maulika Kohli, Arin Fisher, Ni Sun-Suslow, Anne Heaton, Matthew S Dawson, Jennifer Marquie, Donald R Franklin, Maria Marquine, Jennifer E Iudicello, Robert K Heaton, David J Moore	Journal Of The International Neuropsychological Society : JINS	2022-12-13	Abstract
Stool multi-omics for the study of host-microbe interactions in inflammatory bowel disease.	Consuelo Sauceda, Charlie Bayne, Khadijeh Sudqi, Antonio Gonzalez, Parambir S Dulai, Rob Knight, David J Gonzalez, Carlos G Gonzalez	Gut Microbes	2022-12-12	Abstract
Revealing Causes for False-Positive and False-Negative Calling of Gene Essentiality in Escherichia coli Using Transposon Insertion Sequencing.	Donghui Choe, Uigi Kim, Soonkyu Hwang, Sang Woo Seo, Donghyuk Kim, Suhyung Cho, Bernhard Palsson, Byung-Kwan Cho	MSystems	2022-12-12	Abstract
Comparison of bacterial suppression by phage cocktails, dual-receptor generalists, and coevolutionarily trained phages.	Joshua M Borin, Justin J Lee, Krista R Gerbino, Justin R Meyer	Evolutionary Applications	2022-12-09	Abstract
Host-microbiome interactions in the holobiome of Atopic Dermatitis.	Elise Burger, Richard Gallo	The Journal Of Allergy And Clinical Immunology	2022-12-09	Abstract
Effects of Variation in Urine Sample Storage Conditions on 16S Urogenital Microbiome Analyses.	Tanya Kumar, MacKenzie Bryant, Kalen Cantrell, Se Jin Song, Daniel McDonald, Helena M Tubb, Sawyer Farmer, Emily S Lukacz, Linda Brubaker, Rob Knight	MSystems	2022-12-08	Abstract
Breathing and Tilting: Mesoscale Simulations Illuminate Influenza Glycoprotein Vulnerabilities.	Lorenzo Casalino, Christian Seitz, Julia Lederhofer, Yaroslav Tsybovsky, Ian A Wilson, Masaru Kanekiyo, Rommie E Amaro	ACS Central Science	2022-12-08	Abstract
A Reproducible and Tunable Synthetic Soil Microbial Community Provides New Insights into Microbial Ecology.	Joanna Coker, Kateryna Zhalnina, Clarisse Marotz, Deepan Thiruppathy, Megan Tjuanta, Gavin D'Elia, Rodas Hailu, Talon Mahosky, Meagan Rowan, Trent R Northen, Karsten Zengler	MSystems	2022-12-06	Abstract
Multicenter Evaluation of the Cepheid Xpert GBS LB XC Test.	Phyu M Thwe, Matthew L Faron, David T Pride, Amorina Cruz, Derek Gerstbrein, Karen A Nahmod, Lindsay Bigham, Xiaotang Du, Xixi Lu, Stephanie Moya, Ping Ren	Journal Of Clinical Microbiology	2022-12-06	Abstract
Vaccination induces HIV broadly neutralizing antibody precursors in humans.	David J Leggat, Kristen W Cohen, Jordan R Willis, William J Fulp, Allan C deCamp, Oleksandr Kalyuzhniy, Christopher A Cottrell, Sergey Menis, Greg Finak, Lamar Ballweber-Fleming, Abhinaya Srikanth, Jason R Plyler, Torben Schiffner, Alessia Liguori, Farhad Rahaman, Angela Lombardo, Vincent Philiponis, Rachael E Whaley, Aaron Seese, Joshua Brand, Alexis M Ruppel, Wesley Hoyland, Nicole L Yates, LaTonya D Williams, Kelli Greene, Hongmei Gao, Celia R Mahoney, Martin M Corcoran, Alberto Cagigi, Alison Taylor, David M Brown, David R Ambrozak, Troy Sincomb, Xiaozhen Hu, Ryan Tingle, Erik Georgeson, Saman Eskandarzadeh, Nushin Alavi, Danny Lu, Tina-Marie Mullen, Michael Kubitz, Bettina Groschel, Janine Maenza, Orpheus Kolokythas, Nadia Khati, Jeffrey Bethony, Shane Crotty, Mario Roederer, Gunilla B Karlsson Hedestam, Georgia D Tomaras, David Montefiori, David Diemert, Richard A Koup, Dagna S Laufer, M Juliana McElrath, Adrian B McDermott, William R Schief	Science (New York, N.Y.)	2022-12-02	Abstract
Plant and fungal species interactions differ between aboveground and belowground habitats in mountain forests of eastern China.	Teng Yang, Leho Tedersoo, Pamela S Soltis, Douglas E Soltis, Miao Sun, Yuying Ma, Yingying Ni, Xu Liu, Xiao Fu, Yu Shi, Han-Yang Lin, Yun-Peng Zhao, Chengxin Fu, Chuan-Chao Dai, Jack A Gilbert, Haiyan Chu	Science China. Life Sciences	2022-12-01	Abstract
Antiretroviral Drugs for Treatment and Prevention of HIV Infection in Adults: 2022 Recommendations of the International Antiviral Society-USA Panel.	Rajesh T Gandhi, Roger Bedimo, Jennifer F Hoy, Raphael J Landovitz, Davey M Smith, Ellen F Eaton, Clara Lehmann, Sandra A Springer, Paul E Sax, Melanie A Thompson, Constance A Benson, Susan P Buchbinder, Carlos Del Rio, Joseph J Eron, Huldrych F Günthard, Jean-Michel Molina, Donna M Jacobsen, Michael S Saag	JAMA	2022-12-01	Abstract
A self-powered ingestible wireless biosensing system for real-time in situ monitoring of gastrointestinal tract metabolites.	Ernesto De la Paz, Nikhil Harsha Maganti, Alexander Trifonov, Itthipon Jeerapan, Kuldeep Mahato, Lu Yin, Thitaporn Sonsa-Ard, Nicolas Ma, Won Jung, Ryan Burns, Amir Zarrinpar, Joseph Wang, Patrick P Mercier	Nature Communications	2022-12-01	Abstract
A high-protein diet prevents weight regain.	Amir Zarrinpar	Nature Metabolism	2022-12-01	Abstract
ChiMera: an easy to use pipeline for bacterial genome based metabolic network reconstruction, evaluation and visualization.	Gustavo Tamasco, Manish Kumar, Karsten Zengler, Rafael Silva-Rocha, Ricardo Roberto da Silva	BMC Bioinformatics	2022-11-30	Abstract
Clinical Outcomes of Omicron Variant (B.1.1.529) Infection in Children and Adolescents Hospitalized With COVID-19 in Brazil With Observational Data on the Efficacy of the Vaccines in Adolescents.	Eduardo A Oliveira, Maria Christina L Oliveira, Ana Cristina Simões E Silva, Enrico A Colosimo, Robert H Mak, Mariana A Vasconcelos, Ludmila R Silva, Daniella B Martelli, Clara C Pinhati, Hercílio Martelli-Júnior	The Pediatric Infectious Disease Journal	2022-11-29	Abstract
Culture-Independent Detection and Identification of Serovars.	Michael A Matthias, Aristea A Lubar, Shalka S Lanka Acharige, Kira L Chaiboonma, Nicholas N Pilau, Alan S Marroquin, Dinesha Jayasundara, Suneth Agampodi, Joseph M Vinetz	Microbiology Spectrum	2022-11-29	Abstract
The human pathobiont secreted protease Mfsap1 regulates cell dispersal and exacerbates skin inflammation.	Joleen P Z Goh, Fiorella Ruchti, Si En Poh, Winston L C Koh, Kiat Yi Tan, Yan Ting Lim, Steven T G Thng, Radoslaw M Sobota, Shawn S Hoon, Chenxi Liu, Anthony J O'Donoghue, Salomé LeibundGut-Landmann, Hazel H Oon, Hao Li, Thomas L Dawson	Proceedings Of The National Academy Of Sciences Of The United States Of America	2022-11-29	Abstract
Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity.	Justin P Shaffer, Louis-Félix Nothias, Luke R Thompson, Jon G Sanders, Rodolfo A Salido, Sneha P Couvillion, Asker D Brejnrod, Franck Lejzerowicz, Niina Haiminen, Shi Huang, Holly L Lutz, Qiyun Zhu, Cameron Martino, James T Morton, Smruthi Karthikeyan, Mélissa Nothias-Esposito, Kai Dührkop, Sebastian Böcker, Hyun Woo Kim, Alexander A Aksenov, Wout Bittremieux, Jeremiah J Minich, Clarisse Marotz, MacKenzie M Bryant, Karenina Sanders, Tara Schwartz, Greg Humphrey, Yoshiki Vásquez-Baeza, Anupriya Tripathi, Laxmi Parida, Anna Paola Carrieri, Kristen L Beck, Promi Das, Antonio González, Daniel McDonald, Joshua Ladau, Søren M Karst, Mads Albertsen, Gail Ackermann, Jeff DeReus, Torsten Thomas, Daniel Petras, Ashley Shade, James Stegen, Se Jin Song, Thomas O Metz, Austin D Swafford, Pieter C Dorrestein, Janet K Jansson, Jack A Gilbert, Rob Knight,	Nature Microbiology	2022-11-28	Abstract
Representative oral microbiome data for the US population: the National Health and Nutrition Examination Survey.	Emily Vogtmann, Anil K Chaturvedi, Martin J Blaser, Nicholas A Bokulich, J Gregory Caporaso, Maura L Gillison, Xing Hua, Autumn G Hullings, Rob Knight, Vaishnavi Purandare, Jianxin Shi, Yunhu Wan, Neal D Freedman, Christian C Abnet	The Lancet. Microbe	2022-11-28	Abstract
Characterization of SARS-CoV-2 antibodies in human milk from 21 women with confirmed COVID-19 infection.	Lars Bode, Kerri Bertrand, Julia A Najera, Annalee Furst, Gordon Honerkamp-Smith, Adam D Shandling, Christina D Chambers, David Camerini, Joseph J Campo	Pediatric Research	2022-11-25	Abstract
Species Capable of Growth at Pressures Ranging Over 5 Orders of Magnitude, from the Surface of Mars (10 Pa) to Deep Oceans (10 Pa) in the Solar System.	Kathleen M Miller, Flora Tang, Sixuan Li, Kelli K Mullane, Brontë R Shelton, Lam Bui, Douglas H Bartlett, Wayne L Nicholson	Astrobiology	2022-11-24	Abstract
Urobiome changes differ based on OAB treatment in adult females.	Thomas Halverson, Elizabeth R Mueller, Linda Brubaker, Alan J Wolfe	International Urogynecology Journal	2022-11-24	Abstract
The association between pre-existing asthma and reduced risk of death among children and adolescents hospitalized with COVID-19 in Brazil.	Maria C L Oliveira, Enrico A Colosimo, Mariana A Vasconcelos, Hercílio Martelli-Júnior, Robert H Mak, Ludmila R Silva, Clara C Pinhati, Ana C Simões E Silva, Eduardo A Oliveira	Pediatric Pulmonology	2022-11-23	Abstract
Analyzing rare mutations in metagenomes assembled using long and accurate reads.	Marcus W Fedarko, Mikhail Kolmogorov, Pavel A Pevzner	Genome Research	2022-11-23	Abstract
Host biology, ecology and the environment influence microbial biomass and diversity in 101 marine fish species.	Jeremiah J Minich, Andreas Härer, Joseph Vechinski, Benjamin W Frable, Zachary R Skelton, Emily Kunselman, Michael A Shane, Daniela S Perry, Antonio Gonzalez, Daniel McDonald, Rob Knight, Todd P Michael, Eric E Allen	Nature Communications	2022-11-17	Abstract
NPOmix: A machine learning classifier to connect mass spectrometry fragmentation data to biosynthetic gene clusters.	Tiago F Leão, Mingxun Wang, Ricardo da Silva, Alexey Gurevich, Anelize Bauermeister, Paulo Wender P Gomes, Asker Brejnrod, Evgenia Glukhov, Allegra T Aron, Joris J R Louwen, Hyun Woo Kim, Raphael Reher, Marli F Fiore, Justin J J van der Hooft, Lena Gerwick, William H Gerwick, Nuno Bandeira, Pieter C Dorrestein	PNAS Nexus	2022-11-16	Abstract
On the illusion of auxotrophy: met15Δ yeast cells can grow on inorganic sulfur, thanks to the previously uncharacterized homocysteine synthase Yll058w.	S Branden Van Oss, Saurin Bipin Parikh, Nelson Castilho Coelho, Aaron Wacholder, Ivan Belashov, Sara Zdancewicz, Manuel Michaca, Jiazhen Xu, Yun Pyo Kang, Nathan P Ward, Sang Jun Yoon, Katherine M McCourt, Jake McKee, Trey Ideker, Andrew P VanDemark, Gina M DeNicola, Anne-Ruxandra Carvunis	The Journal Of Biological Chemistry	2022-11-13	Abstract
Correlation between Serum Steroid Hormones and Gut Microbiota in Patients with Alcohol-Associated Liver Disease.	Bei Gao, Yixin Zhu, Weishou Shen, Peter Stärkel, Bernd Schnabl	Metabolites	2022-11-13	Abstract
A prebiotic diet modulates microglial states and motor deficits in α-synuclein overexpressing mice.	Reem Abdel-Haq, Johannes C M Schlachetzki, Joseph C Boktor, Thaisa M Cantu-Jungles, Taren Thron, Mengying Zhang, John W Bostick, Tahmineh Khazaei, Sujatha Chilakala, Livia H Morais, Greg Humphrey, Ali Keshavarzian, Jonathan E Katz, Matthew Thomson, Rob Knight, Viviana Gradinaru, Bruce R Hamaker, Christopher K Glass, Sarkis K Mazmanian	ELife	2022-11-08	Abstract
Spacer Matters: All-Peptide-Based Ligand for Promoting Interfacial Proteolysis and Plasmonic Coupling.	Zhicheng Jin, Chuxuan Ling, Yi Li, Jiajing Zhou, Ke Li, Wonjun Yim, Justin Yeung, Yu-Ci Chang, Tengyu He, Yong Cheng, Pavla Fajtová, Maurice Retout, Anthony J O'Donoghue, Jesse V Jokerst	Nano Letters	2022-11-08	Abstract
RISE FOR HEALTH: Rationale and protocol for a prospective cohort study of bladder health in women.	Ariana L Smith, Kyle Rudser, Bernard L Harlow, Gerald McGwin, Julia Barthold, Sonya S Brady, Linda Brubaker, Shayna D Cunningham, James W Griffith, Kim Kenton, Heather Klusaritz, Cora E Lewis, Emily S Lukacz, Julia Maki, Alayne D Markland, Elizabeth R Mueller, Diane K Newman, Jesse Nodora, Leslie M Rickey, Todd Rockwood, Melissa Simon, Jean F Wyman, Siobhan Sutcliffe,	Neurourology And Urodynamics	2022-11-02	Abstract
Mucosal and Systemic Responses to Severe Acute Respiratory Syndrome Coronavirus 2 Vaccination Determined by Severity of Primary Infection.	Mohammad M Sajadi, Amber Myers, James Logue, Saman Saadat, Narjes Shokatpour, James Quinn, Michelle Newman, Meagan Deming, Zahra Rikhtegaran Tehrani, Laurence S Magder, Maryam Karimi, Abdolrahim Abbasi, Mike Shlyak, Lauren Baracco, Matthew B Frieman, Shane Crotty, Anthony D Harris	MSphere	2022-11-02	Abstract
Coordination of CcpA and CodY Regulators in Staphylococcus aureus USA300 Strains.	Saugat Poudel, Ying Hefner, Richard Szubin, Anand Sastry, Ye Gao, Victor Nizet, Bernhard O Palsson	MSystems	2022-11-02	Abstract
Pan-Genome Analysis of Transcriptional Regulation in Six Salmonella enterica Serovar Typhimurium Strains Reveals Their Different Regulatory Structures.	Yuan Yuan, Yara Seif, Kevin Rychel, Reo Yoo, Siddharth Chauhan, Saugat Poudel, Tahani Al-Bulushi, Bernhard O Palsson, Anand V Sastry	MSystems	2022-11-01	Abstract
synDNA-a Synthetic DNA Spike-in Method for Absolute Quantification of Shotgun Metagenomic Sequencing.	Livia S Zaramela, Megan Tjuanta, Oriane Moyne, Maxwell Neal, Karsten Zengler	MSystems	2022-11-01	Abstract
Sex, puberty, and the gut microbiome.	Laura Sisk-Hackworth, Scott T Kelley, Varykina G Thackray	Reproduction (Cambridge, England)	2022-11-01	Abstract
Drug transporters OAT1 and OAT3 have specific effects on multiple organs and gut microbiome as revealed by contextualized metabolic network reconstructions.	Neema Jamshidi, Sanjay K Nigam	Scientific Reports	2022-10-31	Abstract
The rapidly evolving monkeypox epidemic: A call to action to leave no one behind.	Steffanie A Strathdee, Davey M Smith, Megan Halbrook, Placide Mbala-Kingebeni, Shira Abeles, Francesca Torriani, Anne Rimoin	PLoS Medicine	2022-10-31	Abstract
Sarcopenia-related gut microbial changes are associated with the risk of complications in people with cirrhosis.	Pei-Chang Lee, Kuei-Chuan Lee, Tsung-Chieh Yang, Hsiao-Sheng Lu, Tsung-Yi Cheng, Yu-Jen Chen, Jen-Jie Chiou, Chi-Wei Huang, Ueng-Cheng Yang, Elise Chia-Hui Tan, Shih-Hsuan Chou, Yu-Lun Kuo, Bernd Schnabl, Yi-Hsiang Huang, Ming-Chih Hou	JHEP Reports : Innovation In Hepatology	2022-10-29	Abstract
Autoantibody discovery across monogenic, acquired, and COVID19-associated autoimmunity with scalable PhIP-Seq.	Sara E Vazquez, Sabrina A Mann, Aaron Bodansky, Andrew F Kung, Zoe Quandt, Elise M N Ferré, Nils Landegren, Daniel Eriksson, Paul Bastard, Shen-Ying Zhang, Jamin Liu, Anthea Mitchell, Irina Proekt, David Yu, Caleigh Mandel-Brehm, Chung-Yu Wang, Brenda Miao, Gavin Sowa, Kelsey Zorn, Alice Y Chan, Veronica M Tagi, Chisato Shimizu, Adriana Tremoulet, Kara Lynch, Michael R Wilson, Olle Kämpe, Kerry Dobbs, Ottavia M Delmonte, Rosa Bacchetta, Luigi D Notarangelo, Jane C Burns, Jean-Laurent Casanova, Michail S Lionakis, Troy R Torgerson, Mark S Anderson, Joseph L DeRisi	ELife	2022-10-27	Abstract
The Vi Capsular Polysaccharide of Salmonella Typhi Promotes Macrophage Phagocytosis by Binding the Human C-Type Lectin DC-SIGN.	Lillian F Zhang, Bernd Lepenies, Sayuri Nakamae, Briana M Young, Renato L Santos, Manuela Raffatellu, Brian A Cobb, Hirotaka Hiyoshi, Andreas J Bäumler	MBio	2022-10-26	Abstract
Emergence of SARS-CoV-2 escape mutations during Bamlanivimab therapy in a phase II randomized clinical trial.	Manish C Choudhary, Kara W Chew, Rinki Deo, James P Flynn, James Regan, Charles R Crain, Carlee Moser, Michael D Hughes, Justin Ritz, Ruy M Ribeiro, Ruian Ke, Joan A Dragavon, Arzhang Cyrus Javan, Ajay Nirula, Paul Klekotka, Alexander L Greninger, Courtney V Fletcher, Eric S Daar, David A Wohl, Joseph J Eron, Judith S Currier, Urvi M Parikh, Scott F Sieg, Alan S Perelson, Robert W Coombs, Davey M Smith, Jonathan Z Li,	Nature Microbiology	2022-10-26	Abstract
Abrogation of neutrophil inflammatory pathways and potential reduction of neutrophil-related factors in COVID-19 by intravenous immunoglobulin.	Jorge Adrian Masso-Silva, George Sakoulas, Jarod Olay, Victoria Groysberg, Matthew Geriak, Victor Nizet, Laura E Crotty Alexander, Angela Meier	Frontiers In Immunology	2022-10-20	Abstract
Lessons for Understanding Central Nervous System HIV Reservoirs from the Last Gift Program.	Patricia K Riggs, Antoine Chaillon, Guochun Jiang, Scott L Letendre, Yuyang Tang, Jeff Taylor, Andrew Kaytes, Davey M Smith, Karine Dubé, Sara Gianella	Current HIV/AIDS Reports	2022-10-19	Abstract
Anthrax Meningoencephalitis and Intracranial Hemorrhage.	Nicholas Caffes, Katherine Hendricks, John S Bradley, Nancy A Twenhafel, J Marc Simard	Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America	2022-10-17	Abstract
Systematic Review of Hospital Treatment Outcomes for Naturally Acquired and Bioterrorism-Related Anthrax, 1880-2018.	Marissa K Person, Rachel Cook, John S Bradley, Nathaniel Hupert, William A Bower, Katherine Hendricks	Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America	2022-10-17	Abstract
Inexpensive, Accurate, and Stable Method to Quantitate Blood Alanine Aminotransferase (ALT) Levels.	Phillipp Hartmann, Bernd Schnabl	Methods And Protocols	2022-10-14	Abstract
Experimental Evolution Reveals Unifying Systems-Level Adaptations but Diversity in Driving Genotypes.	Erol S Kavvas, Christopher P Long, Anand Sastry, Saugat Poudel, Maciek R Antoniewicz, Yang Ding, Elsayed T Mohamed, Richard Szubin, Jonathan M Monk, Adam M Feist, Bernhard O Palsson	MSystems	2022-10-13	Abstract
Illuminating the dark metabolome of Pseudo-nitzschia-microbiome associations.	Irina Koester, Zachary A Quinlan, Louis-Félix Nothias, Margot E White, Ariel Rabines, Daniel Petras, John K Brunson, Kai Dührkop, Marcus Ludwig, Sebastian Böcker, Farooq Azam, Andrew E Allen, Pieter C Dorrestein, Lihini I Aluwihare	Environmental Microbiology	2022-10-12	Abstract
Allergen Content and Protease Activity in Milk Feeds from Mothers of Preterm Infants.	Kathleen Luskin, Diba Mortazavi, Sherry Bai-Tong, Kerri Bertrand, Christina Chambers, Keriann Schulkers-Escalante, Alla Ahmad, Stephanie Luedtke, Anthony J O'Donoghue, Majid Ghassemian, Bob Geng, Sandra L Leibel, Sydney A Leibel	Breastfeeding Medicine : The Official Journal Of The Academy Of Breastfeeding Medicine	2022-10-12	Abstract
Transcriptomic profiling of sporadic Alzheimer's disease patients.	Andrew B Caldwell, Balaji G Anantharaman, Srinivasan Ramachandran, Phuong Nguyen, Qing Liu, Ivy Trinh, Douglas R Galasko, Paula A Desplats, Steven L Wagner, Shankar Subramaniam	Molecular Brain	2022-10-12	Abstract
OAT, OATP, and MRP Drug Transporters and the Remote Sensing and Signaling Theory.	Sanjay K Nigam, Jeffry C Granados	Annual Review Of Pharmacology And Toxicology	2022-10-07	Abstract
Regulatory T-cells and GARP expression are decreased in exercise-associated chikungunya viral arthritis flares.	John E Dobbs, Sarah R Tritsch, Liliana Encinales, Andres Cadena, Karol Suchowiecki, Gary Simon, Christopher Mores, Silvana Insignares, Vierys Patricia Villamil Orozco, Mirna Ospino, Lil Avendano Echavez, Carlos Andres Herrera Gomez, Yerlenis Galvis Crespo, Richard Amdur, Alberto David Cabana Jimenez, Carlos Alberto Perez Hernandez, Jennifer Carolina Martinez Zapata, Alfonso Sucerquia Hernandez, Paula Bruges Silvera, Wendy Rosales, Evelyn Mendoza, Estefanie Osorio-Llanes, Jairo Castellar, Dennys Jimenez, Dan M Cooper, Gary S Firestein, Karen Martins, Aileen Y Chang	Frontiers In Immunology	2022-10-07	Abstract
Electrochemical potential enables dormant spores to integrate environmental signals.	Kaito Kikuchi, Leticia Galera-Laporta, Colleen Weatherwax, Jamie Y Lam, Eun Chae Moon, Emmanuel A Theodorakis, Jordi Garcia-Ojalvo, Gürol M Süel	Science (New York, N.Y.)	2022-10-06	Abstract
Opposing roles of hepatic stellate cell subpopulations in hepatocarcinogenesis.	Aveline Filliol, Yoshinobu Saito, Ajay Nair, Dianne H Dapito, Le-Xing Yu, Aashreya Ravichandra, Sonakshi Bhattacharjee, Silvia Affo, Naoto Fujiwara, Hua Su, Qiuyan Sun, Thomas M Savage, John R Wilson-Kanamori, Jorge M Caviglia, LiKang Chin, Dongning Chen, Xiaobo Wang, Stefano Caruso, Jin Ku Kang, Amit Dipak Amin, Sebastian Wallace, Ross Dobie, Deqi Yin, Oscar M Rodriguez-Fiallos, Chuan Yin, Adam Mehal, Benjamin Izar, Richard A Friedman, Rebecca G Wells, Utpal B Pajvani, Yujin Hoshida, Helen E Remotti, Nicholas Arpaia, Jessica Zucman-Rossi, Michael Karin, Neil C Henderson, Ira Tabas, Robert F Schwabe	Nature	2022-10-05	Abstract
AHR is a master regulator of diverse pathways in endogenous metabolism.	Jeffry C Granados, Kian Falah, Imhoi Koo, Ethan W Morgan, Gary H Perdew, Andrew D Patterson, Neema Jamshidi, Sanjay K Nigam	Scientific Reports	2022-10-05	Abstract
Age-dependent aggregation of ribosomal RNA-binding proteins links deterioration in chromatin stability with challenges to proteostasis.	Julie Paxman, Zhen Zhou, Richard O'Laughlin, Yuting Liu, Yang Li, Wanying Tian, Hetian Su, Yanfei Jiang, Shayna E Holness, Elizabeth Stasiowski, Lev S Tsimring, Lorraine Pillus, Jeff Hasty, Nan Hao	ELife	2022-10-04	Abstract
A pals-25 gain-of-function allele triggers systemic resistance against natural pathogens of C. elegans.	Spencer S Gang, Manish Grover, Kirthi C Reddy, Deevya Raman, Ya-Ting Chang, Damian C Ekiert, Michalis Barkoulas, Emily R Troemel	PLoS Genetics	2022-10-03	Abstract
#COVIDisAirborne: AI-enabled multiscale computational microscopy of delta SARS-CoV-2 in a respiratory aerosol.	Abigail Dommer, Lorenzo Casalino, Fiona Kearns, Mia Rosenfeld, Nicholas Wauer, Surl-Hee Ahn, John Russo, Sofia Oliveira, Clare Morris, Anthony Bogetti, Anda Trifan, Alexander Brace, Terra Sztain, Austin Clyde, Heng Ma, Chakra Chennubhotla, Hyungro Lee, Matteo Turilli, Syma Khalid, Teresa Tamayo-Mendoza, Matthew Welborn, Anders Christensen, Daniel Ga Smith, Zhuoran Qiao, Sai K Sirumalla, Michael O'Connor, Frederick Manby, Anima Anandkumar, David Hardy, James Phillips, Abraham Stern, Josh Romero, David Clark, Mitchell Dorrell, Tom Maiden, Lei Huang, John McCalpin, Christopher Woods, Alan Gray, Matt Williams, Bryan Barker, Harinda Rajapaksha, Richard Pitts, Tom Gibbs, John Stone, Daniel M Zuckerman, Adrian J Mulholland, Thomas Miller, Shantenu Jha, Arvind Ramanathan, Lillian Chong, Rommie E Amaro	The International Journal Of High Performance Computing Applications	2022-10-02	Abstract
Transfer of antibiotics and their metabolites in human milk: implications for infant health and microbiota.	Sydney P Thomas, Erce Denizer, Simone Zuffa, Brookie M Best, Lars Bode, Christina D Chambers, Pieter C Dorrestein, George Y Liu, Jeremiah D Momper, Victor Nizet, Shirley M Tsunoda, Adriana H Tremoulet	Pharmacotherapy	2022-10-01	Abstract
Targeted protein S-nitrosylation of ACE2 inhibits SARS-CoV-2 infection.	Chang-Ki Oh, Tomohiro Nakamura, Nathan Beutler, Xu Zhang, Juan Piña-Crespo, Maria Talantova, Swagata Ghatak, Dorit Trudler, Lauren N Carnevale, Scott R McKercher, Malina A Bakowski, Jolene K Diedrich, Amanda J Roberts, Ashley K Woods, Victor Chi, Anil K Gupta, Mia A Rosenfeld, Fiona L Kearns, Lorenzo Casalino, Namir Shaabani, Hejun Liu, Ian A Wilson, Rommie E Amaro, Dennis R Burton, John R Yates, Cyrus Becker, Thomas F Rogers, Arnab K Chatterjee, Stuart A Lipton	Nature Chemical Biology	2022-09-29	Abstract
A Trait-Based Approach to Predicting Viral Host-Range Evolvability.	Hannah M Strobel, Elizabeth C Stuart, Justin R Meyer	Annual Review Of Virology	2022-09-29	Abstract
The gastrointestinal and microbiome impact of a resistant starch blend from potato, banana, and apple fibers: A randomized clinical trial using smart caps.	Douglas Hanes, Brent Nowinski, Joseph J Lamb, Ilona A Larson, Daniel McDonald, Rob Knight, Se Jin Song, Noelle Patno	Frontiers In Nutrition	2022-09-29	Abstract
Organic Anion Transporters (OAT) and Other SLC22 Transporters in Progression of Renal Cell Carcinoma.	Thomas C Whisenant, Sanjay K Nigam	Cancers	2022-09-29	Abstract
Vaccine Effectiveness against SARS-CoV-2 Variants in Adolescents from 15 to 90 Days after Second Dose: A Population-Based Test-Negative Case-Control Study.	Eduardo A Oliveira, Maria Christina L Oliveira, Enrico A Colosimo, Ana Cristina Simões E Silva, Robert H Mak, Mariana A Vasconcelos, Ludmila R Silva, Daniella B Martelli, Clara C Pinhati, Hercílio Martelli-Júnior	The Journal Of Pediatrics	2022-09-29	Abstract
Evolution of the ancestral mammalian karyotype and syntenic regions.	Joana Damas, Marco Corbo, Jaebum Kim, Jason Turner-Maier, Marta Farré, Denis M Larkin, Oliver A Ryder, Cynthia Steiner, Marlys L Houck, Shaune Hall, Lily Shiue, Stephen Thomas, Thomas Swale, Mark Daly, Jonas Korlach, Marcela Uliano-Silva, Camila J Mazzoni, Bruce W Birren, Diane P Genereux, Jeremy Johnson, Kerstin Lindblad-Toh, Elinor K Karlsson, Martin T Nweeia, Rebecca N Johnson, , Harris A Lewin	Proceedings Of The National Academy Of Sciences Of The United States Of America	2022-09-26	Abstract
Asymptomatic or symptomatic SARS-CoV-2 infection plus vaccination confers increased adaptive immunity to variants of concern.	Peifang Sun, Irene Ramos, Camila H Coelho, Alba Grifoni, Corey A Balinsky, Sindhu Vangeti, Alison Tarke, Nathaniel I Bloom, Vihasi Jani, Silvia J Jakubski, David A Boulifard, Elizabeth Cooper, Carl W Goforth, Jan Marayag, Amethyst Marrone, Edgar Nunez, Lindsey White, Chad K Porter, Victor A Sugiharto, Megan Schilling, Avinash S Mahajan, Charmagne Beckett, Alessandro Sette, Stuart C Sealfon, Shane Crotty, Andrew G Letizia	IScience	2022-09-23	Abstract
Nanoparticle-modified microrobots for in vivo antibiotic delivery to treat acute bacterial pneumonia.	Fangyu Zhang, Jia Zhuang, Zhengxing Li, Hua Gong, Berta Esteban-Fernández de Ávila, Yaou Duan, Qiangzhe Zhang, Jiarong Zhou, Lu Yin, Emil Karshalev, Weiwei Gao, Victor Nizet, Ronnie H Fang, Liangfang Zhang, Joseph Wang	Nature Materials	2022-09-22	Abstract
Candida albicans-specific Th17 cell-mediated response contributes to alcohol-associated liver disease.	Suling Zeng, Elisa Rosati, Carina Saggau, Berith Messner, Huikuan Chu, Yi Duan, Phillipp Hartmann, Yanhan Wang, Shengyun Ma, Wendy Jia Men Huang, Jihyung Lee, Sung Min Lee, Raquel Carvalho-Gontijo, Vivian Zhang, Joseph P Hoffmann, Jay K Kolls, Eyal Raz, David A Brenner, Tatiana Kisseleva, Salomé LeibundGut-Landmann, Petra Bacher, Peter Stärkel, Bernd Schnabl	Cell Host & Microbe	2022-09-22	Abstract
Long-primed germinal centres with enduring affinity maturation and clonal migration.	Jeong Hyun Lee, Henry J Sutton, Christopher A Cottrell, Ivy Phung, Gabriel Ozorowski, Leigh M Sewall, Rebecca Nedellec, Catherine Nakao, Murillo Silva, Sara T Richey, Jonathan L Torre, Wen-Hsin Lee, Erik Georgeson, Michael Kubitz, Sam Hodges, Tina-Marie Mullen, Yumiko Adachi, Kimberly M Cirelli, Amitinder Kaur, Carolina Allers, Marissa Fahlberg, Brooke F Grasperge, Jason P Dufour, Faith Schiro, Pyone P Aye, Oleksandr Kalyuzhniy, Alessia Liguori, Diane G Carnathan, Guido Silvestri, Xiaoying Shen, David C Montefiori, Ronald S Veazey, Andrew B Ward, Lars Hangartner, Dennis R Burton, Darrell J Irvine, William R Schief, Shane Crotty	Nature	2022-09-21	Abstract
Actinopolymorphols E and F, pyrazine alkaloids from a marine sediment-derived bacterium Streptomyces sp.	Sohee Kim, Prima F Hillman, Ji Young Lee, Juri Lee, Jihye Lee, Sun-Shin Cha, Dong-Chan Oh, Sang-Jip Nam, William Fenical	The Journal Of Antibiotics	2022-09-15	Abstract
Strengthening of enterococcal biofilms by Esp.	Lindsey Spiegelman, Adrian Bahn-Suh, Elizabeth T Montaño, Ling Zhang, Greg L Hura, Kathryn A Patras, Amit Kumar, F Akif Tezcan, Victor Nizet, Susan E Tsutakawa, Partho Ghosh	PLoS Pathogens	2022-09-14	Abstract
The Transcription Factor YY-1 Is an Essential Regulator of T Follicular Helper Cell Differentiation.	Simon Bélanger, Sonya Haupt, Brian L Freeman, Adam J Getzler, Huitian Diao, Matthew E Pipkin, Shane Crotty	Journal Of Immunology (Baltimore, Md. : 1950)	2022-09-12	Abstract
Siderophore Immunization Restricted Colonization of Adherent-Invasive Escherichia coli and Ameliorated Experimental Colitis.	Romana R Gerner, Suzana Hossain, Artur Sargun, Kareem Siada, Grant J Norton, Tengfei Zheng, Wilma Neumann, Sean-Paul Nuccio, Elizabeth M Nolan, Manuela Raffatellu	MBio	2022-09-12	Abstract
Development of host immune response to bacteriophage in a lung transplant recipient on adjunctive phage therapy for a multidrug resistant pneumonia.	Jennifer M Dan, Susan M Lehman, Rita Al-Kolla, Samuel Penziner, Kamyar Afshar, Gordon Yung, Eugene Golts, Nancy Law, Cathy Logan, Zsuzsanna Kovach, Gill Mearns, Robert T Schooley, Saima Aslam, Shane Crotty	The Journal Of Infectious Diseases	2022-09-09	Abstract
Assembling a Reference Phylogenomic Tree of Bacteria and Archaea by Summarizing Many Gene Phylogenies.	Qiyun Zhu, Siavash Mirarab	Methods In Molecular Biology (Clifton, N.J.)	2022-09-09	Abstract
Zebra: Static and Dynamic Genome Cover Thresholds with Overlapping References.	Daniel Hakim, Stephen Wandro, Karsten Zengler, Livia S Zaramela, Brent Nowinski, Austin Swafford, Qiyun Zhu, Se Jin Song, Antonio Gonzalez, Daniel McDonald, Rob Knight	MSystems	2022-09-08	Abstract
A single-administration therapeutic interfering particle reduces SARS-CoV-2 viral shedding and pathogenesis in hamsters.	Sonali Chaturvedi, Nathan Beutler, Gustavo Vasen, Michael Pablo, Xinyue Chen, Giuliana Calia, Lauren Buie, Robert Rodick, Davey Smith, Thomas Rogers, Leor S Weinberger	Proceedings Of The National Academy Of Sciences Of The United States Of America	2022-09-08	Abstract
Heterogeneous multimeric metabolite ion species observed in LC-MS based metabolomics data sets.	Yasin El Abiead, Christoph Bueschl, Lisa Panzenboeck, Mingxun Wang, Maria Doppler, Bernhard Seidl, Jürgen Zanghellini, Pieter C Dorrestein, Gunda Koellensperger	Analytica Chimica Acta	2022-09-08	Abstract
Advanced transcriptomic analysis reveals the role of efflux pumps and media composition in antibiotic responses of Pseudomonas aeruginosa.	Akanksha Rajput, Hannah Tsunemoto, Anand V Sastry, Richard Szubin, Kevin Rychel, Siddharth M Chauhan, Joe Pogliano, Bernhard O Palsson	Nucleic Acids Research	2022-09-06	Abstract
Research gaps and opportunities in precision nutrition: an NIH workshop report.	Bruce Y Lee, José M Ordovás, Elizabeth J Parks, Cheryl A M Anderson, Albert-László Barabási, Steven K Clinton, Kayla de la Haye, Valerie B Duffy, Paul W Franks, Elizabeth M Ginexi, Kristian J Hammond, Erin C Hanlon, Michael Hittle, Emily Ho, Abigail L Horn, Richard S Isaacson, Patricia L Mabry, Susan Malone, Corby K Martin, Josiemer Mattei, Simin Nikbin Meydani, Lorene M Nelson, Marian L Neuhouser, Brendan Parent, Nicolaas P Pronk, Helen M Roche, Suchi Saria, Frank A J L Scheer, Eran Segal, Mary Ann Sevick, Tim D Spector, Linda B Van Horn, Krista A Varady, Venkata Saroja Voruganti, Marie F Martinez	The American Journal Of Clinical Nutrition	2022-09-02	Abstract
-Acetyl Migration within the Sialic Acid Side Chain: A Mechanistic Study Using the Nanoreactor.	Lisa Oh, Yang Ji, Wanqing Li, Ajit Varki, Xi Chen, Lee-Ping Wang	Biochemistry	2022-09-02	Abstract
Limited microbiome differences in captive and semi-wild primate populations consuming similar diets.	Sahana Kuthyar, Karli Watson, Shi Huang, Lauren J N Brent, Michael Platt, Julie Horvath, Janis Gonzalez-Martinez, Melween Martínez, Filipa Godoy-Vitorino, Rob Knight, Maria Gloria Dominguez-Bello, Katherine R Amato	FEMS Microbiology Ecology	2022-09-01	Abstract
Hyponatremia in Patients With Multisystem Inflammatory Syndrome in Children.	Tatyana Mills, Aditi Trivedi, Adriana H Tremoulet, Daniel Hershey, Jane C Burns	The Pediatric Infectious Disease Journal	2022-09-01	Abstract
Proof of Concept for the Detection with Custom Printed Electrodes of Enterobactin as a Marker of .	Alexandra Canciu, Andreea Cernat, Mihaela Tertis, Silvia Botarca, Madalina Adriana Bordea, Joseph Wang, Cecilia Cristea	International Journal Of Molecular Sciences	2022-08-31	Abstract
SARS-CoV-2 Omicron Variant of Concern: Everything You Wanted to Know about Omicron but Were Afraid to Ask.	Dong Hoon Shin, Davey M Smith, Jun Yong Choi	Yonsei Medical Journal	2022-08-31	Abstract
Introducing the "Microbiomes and Social Equity" Special Collection.	Sue Ishaq, Jack Gilbert	MSystems	2022-08-29	Abstract
Location-specific signatures of Crohn's disease at a multi-omics scale.	Carlos G Gonzalez, Robert H Mills, Qiyun Zhu, Consuelo Sauceda, Rob Knight, Parambir S Dulai, David J Gonzalez	Microbiome	2022-08-24	Abstract
Multi-omics analyses of airway host-microbe interactions in chronic obstructive pulmonary disease identify potential therapeutic interventions.	Zhengzheng Yan, Boxuan Chen, Yuqiong Yang, Xinzhu Yi, Mingyuan Wei, Gertrude Ecklu-Mensah, Mary M Buschmann, Haiyue Liu, Jingyuan Gao, Weijie Liang, Xiaomin Liu, Junhao Yang, Wei Ma, Zhenyu Liang, Fengyan Wang, Dandan Chen, Lingwei Wang, Weijuan Shi, Martin R Stampfli, Pan Li, Shenhai Gong, Xia Chen, Wensheng Shu, Emad M El-Omar, Jack A Gilbert, Martin J Blaser, Hongwei Zhou, Rongchang Chen, Zhang Wang	Nature Microbiology	2022-08-22	Abstract
Antiviral and clinical activity of bamlanivimab in a randomized trial of non-hospitalized adults with COVID-19.	Kara W Chew, Carlee Moser, Eric S Daar, David A Wohl, Jonathan Z Li, Robert W Coombs, Justin Ritz, Mark Giganti, Arzhang Cyrus Javan, Yijia Li, Manish C Choudhary, Rinki Deo, Carlos Malvestutto, Paul Klekotka, Karen Price, Ajay Nirula, William Fischer, Veenu Bala, Ruy M Ribeiro, Alan S Perelson, Courtney V Fletcher, Joseph J Eron, Judith S Currier, , Michael D Hughes, Davey M Smith	Nature Communications	2022-08-22	Abstract
SARS-CoV-2 and MERS-CoV Spike Protein Binding Studies Support Stable Mimic of Bound 9--Acetylated Sialic Acids.	Lisa Oh, Ajit Varki, Xi Chen, Lee-Ping Wang	Molecules (Basel, Switzerland)	2022-08-20	Abstract
Structural Basis of Stereospecific Vanadium-Dependent Haloperoxidase Family Enzymes in Napyradiomycin Biosynthesis.	Percival Yang-Ting Chen, Sanjoy Adak, Jonathan R Chekan, David K Liscombe, Akimasa Miyanaga, Peter Bernhardt, Stefan Diethelm, Elisha N Fielding, Jonathan H George, Zachary D Miles, Lauren A M Murray, Taylor S Steele, Jaclyn M Winter, Joseph P Noel, Bradley S Moore	Biochemistry	2022-08-19	Abstract
Discovery, classification, evolution and diversity of Siglecs.	Takashi Angata, Ajit Varki	Molecular Aspects Of Medicine	2022-08-18	Abstract
Interdependence of Sebaceous Lipids and the Microbiome in Atopic Dermatitis.	Samia Almoughrabie, Richard L Gallo	The Journal Of Investigative Dermatology	2022-08-16	Abstract
Comparison of the APAS Independence Automated Plate Reader System with the Manual Standard of Care for Processing Urine Culture Specimens.	Megan Chiu, Peiting Kuo, Khrissa Lecrone, Andrew Garcia, Ruohui Chen, Natalie E Quach, Xin M Tu, David T Pride	Microbiology Spectrum	2022-08-16	Abstract
A Self-Immolative Fluorescent Probe for Selective Detection of SARS-CoV-2 Main Protease.	Ming Xu, Jiajing Zhou, Yong Cheng, Zhicheng Jin, Alex E Clark, Tengyu He, Wonjun Yim, Yi Li, Yu-Ci Chang, Zhuohong Wu, Pavla Fajtová, Anthony J O'Donoghue, Aaron F Carlin, Michael D Todd, Jesse V Jokerst	Analytical Chemistry	2022-08-16	Abstract
Bicarbonate Effects on Antibacterial Immunity and Mucus Glycobiology in the Cystic Fibrosis Lung: A Review With Selected Experimental Observations.	Ruth Siew, Tzung-Lin Ou, Samira Dahesh, Kathryn Akong, Victor Nizet	Infectious Microbes & Diseases	2022-08-16	Abstract
Design and validation of HIV peptide pools for detection of HIV-specific CD4+ and CD8+ T cells.	Rita Al-Kolla, Alba Grifoni, Shane Crotty, Alessandro Sette, Sara Gianella, Jennifer Dan	PloS One	2022-08-16	Abstract
Nasal and Plasma Severe Acute Respiratory Syndrome Coronavirus 2 RNA Levels Are Associated With Timing of Symptom Resolution in the ACTIV-2 Trial of Nonhospitalized Adults With Coronavirus Disease 2019.	Yijia Li, Linda J Harrison, Kara W Chew, Judy S Currier, David A Wohl, Eric S Daar, Teresa H Evering, Ryan Wu, Mark Giganti, Justin Ritz, Arzhang Cyrus Javan, Robert W Coombs, Carlee Moser, Michael D Hughes, Joseph J Eron, Davey M Smith, Jonathan Z Li	Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America	2022-08-15	Abstract
Structure-Based Identification of Naphthoquinones and Derivatives as Novel Inhibitors of Main Protease M and Papain-like Protease PL of SARS-CoV-2.	Lucianna H Santos, Thales Kronenberger, Renata G Almeida, Elany B Silva, Rafael E O Rocha, Joyce C Oliveira, Luiza V Barreto, Danielle Skinner, Pavla Fajtová, Miriam A Giardini, Brendon Woodworth, Conner Bardine, André L Lourenço, Charles S Craik, Antti Poso, Larissa M Podust, James H McKerrow, Jair L Siqueira-Neto, Anthony J O'Donoghue, Eufrânio N da Silva Júnior, Rafaela S Ferreira	Journal Of Chemical Information And Modeling	2022-08-12	Abstract
Author Correction: Cross-reactive immunity against the SARS-CoV-2 Omicron variant is low in pediatric patients with prior COVID-19 or MIS-C.	Juanjie Tang, Tanya Novak, Julian Hecker, Gabrielle Grubbs, Fatema Tuz Zahra, Lorenza Bellusci, Sara Pourhashemi, Janet Chou, Kristin Moffitt, Natasha B Halasa, Stephanie P Schwartz, Tracie C Walker, Keiko M Tarquinio, Matt S Zinter, Mary A Staat, Shira J Gertz, Natalie Z Cvijanovich, Jennifer E Schuster, Laura L Loftis, Bria M Coates, Elizabeth H Mack, Katherine Irby, Julie C Fitzgerald, Courtney M Rowan, Michele Kong, Heidi R Flori, Aline B Maddux, Steven L Shein, Hillary Crandall, Janet R Hume, Charlotte V Hobbs, Adriana H Tremoulet, Chisato Shimizu, Jane C Burns, Sabrina R Chen, Hye Kyung Moon, Christoph Lange, Adrienne G Randolph, Surender Khurana	Nature Communications	2022-08-12	Abstract
The Microbiome and Mental Health Across the Lifespan.	Faith Dickerson, Amanda Hazel Dilmore, Filipa Godoy-Vitorino, Tanya T Nguyen, Martin Paulus, Adrian A Pinto-Tomas, Cristofer Moya-Roman, Ibrahim Zuniga-Chaves, Emily G Severance, Dilip V Jeste	Current Topics In Behavioral Neurosciences	2022-08-11	Abstract
Broadly neutralizing antibodies to SARS-related viruses can be readily induced in rhesus macaques.	Wan-Ting He, Meng Yuan, Sean Callaghan, Rami Musharrafieh, Ge Song, Murillo Silva, Nathan Beutler, Wen-Hsin Lee, Peter Yong, Jonathan L Torres, Mariane Melo, Panpan Zhou, Fangzhu Zhao, Xueyong Zhu, Linghang Peng, Deli Huang, Fabio Anzanello, James Ricketts, Mara Parren, Elijah Garcia, Melissa Ferguson, William Rinaldi, Stephen A Rawlings, David Nemazee, Davey M Smith, Bryan Briney, Yana Safonova, Thomas F Rogers, Jennifer M Dan, Zeli Zhang, Daniela Weiskopf, Alessandro Sette, Shane Crotty, Darrell J Irvine, Andrew B Ward, Ian A Wilson, Dennis R Burton, Raiees Andrabi	Science Translational Medicine	2022-08-10	Abstract
Acetate reprograms gut microbiota during alcohol consumption.	Cameron Martino, Livia S Zaramela, Bei Gao, Mallory Embree, Janna Tarasova, Seth J Parker, Yanhan Wang, Huikuan Chu, Peng Chen, Kuei-Chuan Lee, Daniela Domingos Galzerani, Jivani M Gengatharan, Asama Lekbua, Maxwell Neal, Rob Knight, Hidekazu Tsukamoto, Christian M Metallo, Bernd Schnabl, Karsten Zengler	Nature Communications	2022-08-08	Abstract
Native metabolomics identifies the rivulariapeptolide family of protease inhibitors.	Raphael Reher, Allegra T Aron, Pavla Fajtová, Paolo Stincone, Berenike Wagner, Alicia I Pérez-Lorente, Chenxi Liu, Ido Y Ben Shalom, Wout Bittremieux, Mingxun Wang, Kyowon Jeong, Marie L Matos-Hernandez, Kelsey L Alexander, Eduardo J Caro-Diaz, C Benjamin Naman, J H William Scanlan, Phil M M Hochban, Wibke E Diederich, Carlos Molina-Santiago, Diego Romero, Khaled A Selim, Peter Sass, Heike Brötz-Oesterhelt, Chambers C Hughes, Pieter C Dorrestein, Anthony J O'Donoghue, William H Gerwick, Daniel Petras	Nature Communications	2022-08-08	Abstract
Breathing and tilting: mesoscale simulations illuminate influenza glycoprotein vulnerabilities.	Lorenzo Casalino, Christian Seitz, Julia Lederhofer, Yaroslav Tsybovsky, Ian A Wilson, Masaru Kanekiyo, Rommie E Amaro	BioRxiv : The Preprint Server For Biology	2022-08-07	Abstract
Intestinal transgene delivery with native E. coli chassis allows persistent physiological changes.	Baylee J Russell, Steven D Brown, Nicole Siguenza, Irene Mai, Anand R Saran, Amulya Lingaraju, Erica S Maissy, Ana C Dantas Machado, Antonio F M Pinto, Concepcion Sanchez, Leigh-Ana Rossitto, Yukiko Miyamoto, R Alexander Richter, Samuel B Ho, Lars Eckmann, Jeff Hasty, David J Gonzalez, Alan Saghatelian, Rob Knight, Amir Zarrinpar	Cell	2022-08-04	Abstract
Architecture and self-assembly of the jumbo bacteriophage nuclear shell.	Thomas G Laughlin, Amar Deep, Amy M Prichard, Christian Seitz, Yajie Gu, Eray Enustun, Sergey Suslov, Kanika Khanna, Erica A Birkholz, Emily Armbruster, J Andrew McCammon, Rommie E Amaro, Joe Pogliano, Kevin D Corbett, Elizabeth Villa	Nature	2022-08-03	Abstract
Duodenal CD8+ T resident memory cell apoptosis contributes to gut barrier dysfunction and microbial translocation in early alcohol-associated liver disease in humans.	Luca Maccioni, Axelle Loriot, Joseph Dewulf, Guido Bommer, Yves Horsmans, Nicolas Lanthier, Isabelle Leclercq, Bernd Schnabl, Peter Stärkel	Alimentary Pharmacology & Therapeutics	2022-08-02	Abstract
Fostering Sustainable Biomedical Research Training in Mozambique: A Spin-Off of the Medical Education Partnership Initiative.	Emília Virgínia Noormahomed, Sérgio Noormahomed, Delfina Hlashwayo, Emília Martins, Mamudo Ismail, Stephen W Bickler, Jean Nachega, Manuel Mahoche, Kim E Barrett, Constance A Benson, Robert T Schooley	Annals Of Global Health	2022-08-02	Abstract
Vascular Proteome Responses Precede Organ Dysfunction in a Murine Model of Staphylococcus aureus Bacteremia.	James T Sorrentino, Gregory J Golden, Claire Morris, Chelsea D Painter, Victor Nizet, Alexandre Rosa Campos, Jeffrey W Smith, Christofer Karlsson, Johan Malmström, Nathan E Lewis, Jeffrey D Esko, Alejandro Gómez Toledo	MSystems	2022-08-01	Abstract
Analysis of the FAST™ system for expedited identification and antimicrobial susceptibility testing of bloodborne pathogens.	Peiting Kuo, Khrissa LeCrone, Megan Chiu, Susan Realegeno, David T Pride	Diagnostic Microbiology And Infectious Disease	2022-07-30	Abstract
Evaluating impacts of syntenic block detection strategies on rearrangement phylogeny using Mycobacterium tuberculosis isolates.	Afif Elghraoui, Siavash Mirarab, Krister M Swenson, Faramarz Valafar	Bioinformatics (Oxford, England)	2022-07-29	Abstract
Microbiota succession throughout life from the cradle to the grave.	Cameron Martino, Amanda Hazel Dilmore, Zachary M Burcham, Jessica L Metcalf, Dilip Jeste, Rob Knight	Nature Reviews. Microbiology	2022-07-29	Abstract
RNA Fluorescence in situ Hybridization (FISH) to Visualize Microbial Colonization and Infection in Caenorhabditis elegans Intestines.	Dalaena E Rivera, Vladimir Lažetić, Emily R Troemel, Robert J Luallen	Journal Of Visualized Experiments : JoVE	2022-07-27	Abstract
Comparative Pharmacokinetics of Tixagevimab/Cilgavimab (AZD7442) Administered Intravenously Versus Intramuscularly in Symptomatic SARS-CoV-2 Infection.	Rachel A Bender Ignacio, David A Wohl, Rosalin Arends, Venkatesh Pilla Reddy, Ying Mu, Arzhang Cyrus Javan, Michael D Hughes, Joseph J Eron, Judith S Currier, Davey Smith, Kara W Chew, Michael Gibbs, Courtney V Fletcher	Clinical Pharmacology And Therapeutics	2022-07-26	Abstract
Non-invasive skin sampling detects systemically administered drugs in humans.	Morgan Panitchpakdi, Kelly C Weldon, Alan K Jarmusch, Emily C Gentry, Arianna Choi, Yadira Sepulveda, Shaden Aguirre, Kunyang Sun, Jeremiah D Momper, Pieter C Dorrestein, Shirley M Tsunoda	PloS One	2022-07-26	Abstract
Correction for Rudicell et al., "High Prevalence of Simian Immunodeficiency Virus Infection in a Community of Savanna Chimpanzees".	Rebecca S Rudicell, Alex K Piel, Fiona Stewart, Deborah L Moore, Gerald H Learn, Yingying Li, Jun Takehisa, Lilian Pintea, George M Shaw, Jim Moore, Paul M Sharp, Beatrice H Hahn	Journal Of Virology	2022-07-26	Abstract
Lymphatic-preserving treatment sequencing with immune checkpoint inhibition unleashes cDC1-dependent antitumor immunity in HNSCC.	Robert Saddawi-Konefka, Aoife O'Farrell, Farhoud Faraji, Lauren Clubb, Michael M Allevato, Shawn M Jensen, Bryan S Yung, Zhiyong Wang, Victoria H Wu, Nana-Ama Anang, Riyam Al Msari, Shiruyeh Schokrpur, Ida Franiak Pietryga, Alfredo A Molinolo, Jill P Mesirov, Aaron B Simon, Bernard A Fox, Jack D Bui, Andrew Sharabi, Ezra E W Cohen, Joseph A Califano, J Silvio Gutkind	Nature Communications	2022-07-25	Abstract
Protease-Responsive Peptide-Conjugated Mitochondrial-Targeting AIEgens for Selective Imaging and Inhibition of SARS-CoV-2-Infected Cells.	Yong Cheng, Alex E Clark, Jiajing Zhou, Tengyu He, Yi Li, Raina M Borum, Matthew N Creyer, Ming Xu, Zhicheng Jin, Jingcheng Zhou, Wonjun Yim, Zhuohong Wu, Pavla Fajtová, Anthony J O'Donoghue, Aaron F Carlin, Jesse V Jokerst	ACS Nano	2022-07-25	Abstract
Association of compassion and empathy with prosocial health behaviors and attitudes in a pandemic.	Melissa M Karnaze, John Bellettiere, Cinnamon S Bloss	PloS One	2022-07-22	Abstract
TREM2 macrophages induced by human lipids drive inflammation in acne lesions.	Tran H Do, Feiyang Ma, Priscila R Andrade, Rosane Teles, Bruno J de Andrade Silva, Chanyue Hu, Alejandro Espinoza, Jer-En Hsu, Chun-Seok Cho, Myungjin Kim, Jingyue Xi, Xianying Xing, Olesya Plazyo, Lam C Tsoi, Carol Cheng, Jenny Kim, Bryan D Bryson, Alan M O'Neill, Marco Colonna, Johann E Gudjonsson, Eynav Klechevsky, Jun Hee Lee, Richard L Gallo, Barry R Bloom, Matteo Pellegrini, Robert L Modlin	Science Immunology	2022-07-22	Abstract
Coupling of distant ATPase domains in the circadian clock protein KaiC.	Jeffrey A Swan, Colby R Sandate, Archana G Chavan, Alfred M Freeberg, Diana Etwaru, Dustin C Ernst, Joseph G Palacios, Susan S Golden, Andy LiWang, Gabriel C Lander, Carrie L Partch	Nature Structural & Molecular Biology	2022-07-21	Abstract
Harnessing the microbiome to prevent global biodiversity loss.	Raquel S Peixoto, Christian R Voolstra, Michael Sweet, Carlos M Duarte, Susana Carvalho, Helena Villela, Jeantine E Lunshof, Lone Gram, Douglas C Woodhams, Jens Walter, Anna Roik, Ute Hentschel, Rebecca Vega Thurber, Brendan Daisley, Blake Ushijima, Daniele Daffonchio, Rodrigo Costa, Tina Keller-Costa, Jeff S Bowman, Alexandre S Rosado, Gregor Reid, Christopher E Mason, Jenifer B Walke, Torsten Thomas, Gabriele Berg	Nature Microbiology	2022-07-21	Abstract
Omicron spike function and neutralizing activity elicited by a comprehensive panel of vaccines.	John E Bowen, Amin Addetia, Ha V Dang, Cameron Stewart, Jack T Brown, William K Sharkey, Kaitlin R Sprouse, Alexandra C Walls, Ignacio G Mazzitelli, Jennifer K Logue, Nicholas M Franko, Nadine Czudnochowski, Abigail E Powell, Exequiel Dellota, Kumail Ahmed, Asefa Shariq Ansari, Elisabetta Cameroni, Andrea Gori, Alessandra Bandera, Christine M Posavad, Jennifer M Dan, Zeli Zhang, Daniela Weiskopf, Alessandro Sette, Shane Crotty, Najeeha Talat Iqbal, Davide Corti, Jorge Geffner, Gyorgy Snell, Renata Grifantini, Helen Y Chu, David Veesler	Science (New York, N.Y.)	2022-07-19	Abstract
Adaptive laboratory evolution and independent component analysis disentangle complex vancomycin adaptation trajectories.	Anaëlle Fait, Yara Seif, Kasper Mikkelsen, Saugat Poudel, Jerry M Wells, Bernhard O Palsson, Hanne Ingmer	Proceedings Of The National Academy Of Sciences Of The United States Of America	2022-07-19	Abstract
Association of Plasma Eicosanoid Levels With Immune, Viral, and Cognitive Outcomes in People With HIV.	Pragney Deme, Mohammed Moniruzzaman, David Moore, Robert Heaton, Ronald Ellis, Scott Letendre, Norman Haughey	Neurology	2022-07-18	Abstract
Mass Difference Matching Unfolds Hidden Molecular Structures of Dissolved Organic Matter.	Carsten Simon, Kai Dührkop, Daniel Petras, Vanessa-Nina Roth, Sebastian Böcker, Pieter C Dorrestein, Gerd Gleixner	Environmental Science & Technology	2022-07-14	Abstract
Genetic regulation of OAS1 nonsense-mediated decay underlies association with COVID-19 hospitalization in patients of European and African ancestries.	A Rouf Banday, Megan L Stanifer, Oscar Florez-Vargas, Olusegun O Onabajo, Brenen W Papenberg, Muhammad A Zahoor, Lisa Mirabello, Timothy J Ring, Chia-Han Lee, Paul S Albert, Evangelos Andreakos, Evgeny Arons, Greg Barsh, Leslie G Biesecker, David L Boyle, Mark S Brahier, Andrea Burnett-Hartman, Mary Carrington, Euijin Chang, Pyoeng Gyun Choe, Rex L Chisholm, Leandro M Colli, Clifton L Dalgard, Carolynn M Dude, Jeff Edberg, Nathan Erdmann, Heather S Feigelson, Benedito A Fonseca, Gary S Firestein, Adam J Gehring, Cuncai Guo, Michelle Ho, Steven Holland, Amy A Hutchinson, Hogune Im, Les'Shon Irby, Michael G Ison, Naima T Joseph, Hong Bin Kim, Robert J Kreitman, Bruce R Korf, Steven M Lipkin, Siham M Mahgoub, Iman Mohammed, Guilherme L Paschoalini, Jennifer A Pacheco, Michael J Peluso, Daniel J Rader, David T Redden, Marylyn D Ritchie, Brooke Rosenblum, M Elizabeth Ross, Hanaisa P Sant Anna, Sharon A Savage, Sudha Sharma, Eleni Siouti, Alicia K Smith, Vasiliki Triantafyllia, Joselin M Vargas, Jose D Vargas, Anurag Verma, Vibha Vij, Duane R Wesemann, Meredith Yeager, Xu Yu, Yu Zhang, Steeve Boulant, Stephen J Chanock, Jordan J Feld, Ludmila Prokunina-Olsson	Nature Genetics	2022-07-14	Abstract
Non-Native Amino Acid Click Chemistry-Based Technology for Site-Specific Polysaccharide Conjugation to a Bacterial Protein Serving as Both Carrier and Vaccine Antigen.	Neeraj Kapoor, Satoshi Uchiyama, Lucy Pill, Leslie Bautista, Angie Sedra, Lu Yin, Maritoni Regan, Ellen Chu, Taylor Rabara, Melissa Wong, Peter Davey, Jeff Fairman, Victor Nizet	ACS Omega	2022-07-11	Abstract
The Prevalence and Determinants of NAFLD and MAFLD and Their Severity in the VA Primary Care Setting.	Aaron P Thrift, Theresa H Nguyen, Codey Pham, Maya Balakrishnan, Fasiha Kanwal, Rohit Loomba, Hao T Duong, David Ramsey, Hashem B El-Serag	Clinical Gastroenterology And Hepatology : The Official Clinical Practice Journal Of The American Gastroenterological Association	2022-07-08	Abstract
Updating Urinary Microbiome Analyses to Enhance Biologic Interpretation.	Nazema Y Siddiqui, Li Ma, Linda Brubaker, Jialiang Mao, Carter Hoffman, Erin M Dahl, Zhuoqun Wang, Lisa Karstens	Frontiers In Cellular And Infection Microbiology	2022-07-08	Abstract
Comparative Dynamics of Delta and Omicron SARS-CoV-2 Variants across and between California and Mexico.	Sanjay R Mehta, Davey M Smith, Celia Boukadida, Antoine Chaillon	Viruses	2022-07-08	Abstract
Wastewater sequencing reveals early cryptic SARS-CoV-2 variant transmission.	Smruthi Karthikeyan, Joshua I Levy, Peter De Hoff, Greg Humphrey, Amanda Birmingham, Kristen Jepsen, Sawyer Farmer, Helena M Tubb, Tommy Valles, Caitlin E Tribelhorn, Rebecca Tsai, Stefan Aigner, Shashank Sathe, Niema Moshiri, Benjamin Henson, Adam M Mark, Abbas Hakim, Nathan A Baer, Tom Barber, Pedro Belda-Ferre, Marisol Chacón, Willi Cheung, Evelyn S Cresini, Emily R Eisner, Alma L Lastrella, Elijah S Lawrence, Clarisse A Marotz, Toan T Ngo, Tyler Ostrander, Ashley Plascencia, Rodolfo A Salido, Phoebe Seaver, Elizabeth W Smoot, Daniel McDonald, Robert M Neuhard, Angela L Scioscia, Alysson M Satterlund, Elizabeth H Simmons, Dismas B Abelman, David Brenner, Judith C Bruner, Anne Buckley, Michael Ellison, Jeffrey Gattas, Steven L Gonias, Matt Hale, Faith Hawkins, Lydia Ikeda, Hemlata Jhaveri, Ted Johnson, Vince Kellen, Brendan Kremer, Gary Matthews, Ronald W McLawhon, Pierre Ouillet, Daniel Park, Allorah Pradenas, Sharon Reed, Lindsay Riggs, Alison Sanders, Bradley Sollenberger, Angela Song, Benjamin White, Terri Winbush, Christine M Aceves, Catelyn Anderson, Karthik Gangavarapu, Emory Hufbauer, Ezra Kurzban, Justin Lee, Nathaniel L Matteson, Edyth Parker, Sarah A Perkins, Karthik S Ramesh, Refugio Robles-Sikisaka, Madison A Schwab, Emily Spencer, Shirlee Wohl, Laura Nicholson, Ian H Mchardy, David P Dimmock, Charlotte A Hobbs, Omid Bakhtar, Aaron Harding, Art Mendoza, Alexandre Bolze, David Becker, Elizabeth T Cirulli, Magnus Isaksson, Kelly M Schiabor Barrett, Nicole L Washington, John D Malone, Ashleigh Murphy Schafer, Nikos Gurfield, Sarah Stous, Rebecca Fielding-Miller, Richard S Garfein, Tommi Gaines, Cheryl Anderson, Natasha K Martin, Robert Schooley, Brett Austin, Duncan R MacCannell, Stephen F Kingsmore, William Lee, Seema Shah, Eric McDonald, Alexander T Yu, Mark Zeller, Kathleen M Fisch, Christopher Longhurst, Patty Maysent, David Pride, Pradeep K Khosla, Louise C Laurent, Gene W Yeo, Kristian G Andersen, Rob Knight	Nature	2022-07-07	Abstract
Enhancing untargeted metabolomics using metadata-based source annotation.	Julia M Gauglitz, Kiana A West, Wout Bittremieux, Candace L Williams, Kelly C Weldon, Morgan Panitchpakdi, Francesca Di Ottavio, Christine M Aceves, Elizabeth Brown, Nicole C Sikora, Alan K Jarmusch, Cameron Martino, Anupriya Tripathi, Michael J Meehan, Kathleen Dorrestein, Justin P Shaffer, Roxana Coras, Fernando Vargas, Lindsay DeRight Goldasich, Tara Schwartz, MacKenzie Bryant, Gregory Humphrey, Abigail J Johnson, Katharina Spengler, Pedro Belda-Ferre, Edgar Diaz, Daniel McDonald, Qiyun Zhu, Emmanuel O Elijah, Mingxun Wang, Clarisse Marotz, Kate E Sprecher, Daniela Vargas-Robles, Dana Withrow, Gail Ackermann, Lourdes Herrera, Barry J Bradford, Lucas Maciel Mauriz Marques, Juliano Geraldo Amaral, Rodrigo Moreira Silva, Flavio Protasio Veras, Thiago Mattar Cunha, Rene Donizeti Ribeiro Oliveira, Paulo Louzada-Junior, Robert H Mills, Paulina K Piotrowski, Stephanie L Servetas, Sandra M Da Silva, Christina M Jones, Nancy J Lin, Katrice A Lippa, Scott A Jackson, Rima Kaddurah Daouk, Douglas Galasko, Parambir S Dulai, Tatyana I Kalashnikova, Curt Wittenberg, Robert Terkeltaub, Megan M Doty, Jae H Kim, Kyung E Rhee, Julia Beauchamp-Walters, Kenneth P Wright, Maria Gloria Dominguez-Bello, Mark Manary, Michelli F Oliveira, Brigid S Boland, Norberto Peporine Lopes, Monica Guma, Austin D Swafford, Rachel J Dutton, Rob Knight, Pieter C Dorrestein	Nature Biotechnology	2022-07-07	Abstract
Spike-heparan sulfate interactions in SARS-CoV-2 infection.	Fiona L Kearns, Daniel R Sandoval, Lorenzo Casalino, Thomas M Clausen, Mia A Rosenfeld, Charlotte B Spliid, Rommie E Amaro, Jeffrey D Esko	Current Opinion In Structural Biology	2022-07-06	Abstract
Host-parasite coevolution promotes innovation through deformations in fitness landscapes.	Animesh Gupta, Luis Zaman, Hannah M Strobel, Jenna Gallie, Alita R Burmeister, Benjamin Kerr, Einat S Tamar, Roy Kishony, Justin R Meyer	ELife	2022-07-06	Abstract
Liver cirrhosis and immune dysfunction.	Elda Hasa, Phillipp Hartmann, Bernd Schnabl	International Immunology	2022-07-06	Abstract
Increased Innate Immune Susceptibility in Hyperpigmented Bacteriophage-Resistant Mutants of Pseudomonas aeruginosa.	Nitasha D Menon, Samuel Penziner, Elizabeth T Montaño, Raymond Zurich, David T Pride, Bipin G Nair, Geetha B Kumar, Victor Nizet	Antimicrobial Agents And Chemotherapy	2022-07-06	Abstract
Genomically Silent Refractory Gastric Cancer in a Young Patient Exhibits Overexpression of CXCL5.	Jonathan Hernandez, Michael A Turner, Prerna Bali, Mojgan Hosseini, Michael Bouvet, Kaitlyn Kelly, Marygorret Obonyo	Current Oncology (Toronto, Ont.)	2022-07-06	Abstract
Effects of single and dual hypocretin-receptor blockade or knockdown of hypocretin projections to the central amygdala on alcohol drinking in dependent male rats.	Gabriel M Aldridge, Tyler A Zarin, Adam J Brandner, Olivier George, Nicholas W Gilpin, Vez Repunte-Canonigo, Pietro P Sanna, George F Koob, Leandro F Vendruscolo, Brooke E Schmeichel	Addiction Neuroscience	2022-07-03	Abstract
Willingness of older Canadians with HIV to participate in HIV cure research near and after the end-of-life: A mixed-method study.	David Lessard, Karine Dube, Martin Bilodeau, Patrick Keeler, Shari Margolese, Ron Rosenes, Liliya Sinyavskaya, Madeleine Durand, Erika Benko, Colin Kovacs, Charlotte Guerlotté, Wangari E Tharao, Keresa Arnold, Renée Masching, Darien Taylor, José Sousa, Mario Ostrowski, Jeff Taylor, Andy Kaytes, Davey Smith, Sara Gianella Weibel, Nicolas Chomont, Jonathan B Angel, Jean-Pierre Routy, Eric Cohen, Bertrand Lebouche, Cecilia T Costiniuk	AIDS Research And Human Retroviruses	2022-07-01	Abstract
T Cells in Multisystem Inflammatory Syndrome in Children (MIS-C) Have a Predominant CD4+ T Helper Response to SARS-CoV-2 Peptides and Numerous Virus-Specific CD4- CD8- Double-Negative T Cells.	Li-En Hsieh, Jaeyoon Song, Alba Grifoni, Chisato Shimizu, Adriana H Tremoulet, Kirsten B Dummer, Jane C Burns, Alessandro Sette, Alessandra Franco	International Journal Of Molecular Sciences	2022-06-29	Abstract
Human Milk Oligosaccharides Impact Cellular and Inflammatory Gene Expression and Immune Response.	Fernanda Rosa, Ashok K Sharma, Manoj Gurung, David Casero, Katelin Matazel, Lars Bode, Christy Simecka, Ahmed A Elolimy, Patricia Tripp, Christopher Randolph, Timothy W Hand, Keith D Williams, Tanya LeRoith, Laxmi Yeruva	Frontiers In Immunology	2022-06-29	Abstract
Phage Cocktails Constrain the Growth of .	Stephen Wandro, Pooja Ghatbale, Hedieh Attai, Clark Hendrickson, Cyril Samillano, Joy Suh, Sage J B Dunham, David T Pride, Katrine Whiteson	MSystems	2022-06-28	Abstract
Context-aware deconvolution of cell-cell communication with Tensor-cell2cell.	Erick Armingol, Hratch M Baghdassarian, Cameron Martino, Araceli Perez-Lopez, Caitlin Aamodt, Rob Knight, Nathan E Lewis	Nature Communications	2022-06-27	Abstract
Laboratory evolution of synthetic electron transport system variants reveals a larger metabolic respiratory system and its plasticity.	Amitesh Anand, Arjun Patel, Ke Chen, Connor A Olson, Patrick V Phaneuf, Cameron Lamoureux, Ying Hefner, Richard Szubin, Adam M Feist, Bernhard O Palsson	Nature Communications	2022-06-27	Abstract
Heterologous Expression in of the Columbamide Pathway from the Cyanobacterium and Production of New Analogs.	Arnaud Taton, Sebastian Rohrer, Brienna Diaz, Raphael Reher, Andres Mauricio Caraballo Rodriguez, Marsha L Pierce, Pieter C Dorrestein, Lena Gerwick, William H Gerwick, James W Golden	ACS Chemical Biology	2022-06-27	Abstract
The molecular impact of life in an indoor environment.	Alexander A Aksenov, Rodolfo A Salido, Alexey V Melnik, Caitriona Brennan, Asker Brejnrod, Andrés Mauricio Caraballo-Rodríguez, Julia M Gauglitz, Franck Lejzerowicz, Delphine K Farmer, Marina E Vance, Rob Knight, Pieter C Dorrestein	Science Advances	2022-06-24	Abstract
Immunological memory to SARS-CoV-2 infection and COVID-19 vaccines.	Alessandro Sette, Shane Crotty	Immunological Reviews	2022-06-22	Abstract
An M protein coiled coil unfurls and exposes its hydrophobic core to capture LL-37.	Piotr Kolesinski, Kuei-Chen Wang, Yujiro Hirose, Victor Nizet, Partho Ghosh	ELife	2022-06-21	Abstract
Monoclonal antibody treatment drives rapid culture conversion in SARS-CoV-2 infection.	Julie Boucau, Kara W Chew, Manish C Choudhary, Rinki Deo, James Regan, James P Flynn, Charles R Crain, Michael D Hughes, Justin Ritz, Carlee Moser, Joan A Dragavon, Arzhang C Javan, Ajay Nirula, Paul Klekotka, Alexander L Greninger, Robert W Coombs, William A Fischer, Eric S Daar, David A Wohl, Joseph J Eron, Judith S Currier, Davey M Smith, , Jonathan Z Li, Amy K Barczak,	Cell Reports. Medicine	2022-06-20	Abstract
Contribution of Streptococcus pyogenes M87 protein to innate immune resistance and virulence.	Yujiro Hirose, Piotr Kolesinski, Masanobu Hiraoka, Satoshi Uchiyama, Raymond H Zurich, Monika Kumaraswamy, Elisabet Bjanes, Partho Ghosh, Shigetada Kawabata, Victor Nizet	Microbial Pathogenesis	2022-06-17	Abstract
A comparison of six DNA extraction protocols for 16S, ITS and shotgun metagenomic sequencing of microbial communities.	Justin P Shaffer, Carolina S Carpenter, Cameron Martino, Rodolfo A Salido, Jeremiah J Minich, MacKenzie Bryant, Karenina Sanders, Tara Schwartz, Gregory Humphrey, Austin D Swafford, Rob Knight	BioTechniques	2022-06-17	Abstract
Single-cell characterization of step-wise acquisition of carboplatin resistance in ovarian cancer.	Alexander T Wenzel, Devora Champa, Hrishi Venkatesh, Si Sun, Cheng-Yu Tsai, Jill P Mesirov, Jack D Bui, Stephen B Howell, Olivier Harismendy	NPJ Systems Biology And Applications	2022-06-17	Abstract
Characterizing genetic transmission networks among newly diagnosed HIV-1 infected individuals in eastern China: 2012-2016.	Xiaobei Ding, Antoine Chaillon, Xiaohong Pan, Jiafeng Zhang, Ping Zhong, Lin He, Wanjun Chen, Qin Fan, Jun Jiang, Mingyu Luo, Yan Xia, Zhihong Guo, Davey M Smith	PloS One	2022-06-16	Abstract
Small-Molecule Thioesters as SARS-CoV-2 Main Protease Inhibitors: Enzyme Inhibition, Structure-Activity Relationships, Antiviral Activity, and X-ray Structure Determination.	Thanigaimalai Pillaiyar, Philipp Flury, Nadine Krüger, Haixia Su, Laura Schäkel, Elany Barbosa Da Silva, Olga Eppler, Thales Kronenberger, Tianqing Nie, Stephanie Luedtke, Cheila Rocha, Katharina Sylvester, Marvin R I Petry, James H McKerrow, Antti Poso, Stefan Pöhlmann, Michael Gütschow, Anthony J O'Donoghue, Yechun Xu, Christa E Müller, Stefan A Laufer	Journal Of Medicinal Chemistry	2022-06-16	Abstract
Implementation of Practical Surface SARS-CoV-2 Surveillance in School Settings.	Victor J Cantú, Pedro Belda-Ferre, Rodolfo A Salido, Rebecca Tsai, Brett Austin, William Jordan, Menka Asudani, Amanda Walster, Celestine G Magallanes, Holly Valentine, Araz Manjoonian, Carrissa Wijaya, Vinton Omaleki, Karenina Sanders, Stefan Aigner, Nathan A Baer, Maryann Betty, Anelizze Castro-Martínez, Willi Cheung, Evelyn S Crescini, Peter De Hoff, Emily Eisner, Abbas Hakim, Bhavika Kapadia, Alma L Lastrella, Elijah S Lawrence, Toan T Ngo, Tyler Ostrander, Shashank Sathe, Phoebe Seaver, Elizabeth W Smoot, Aaron F Carlin, Gene W Yeo, Louise C Laurent, Anna Liza Manlutac, Rebecca Fielding-Miller, Rob Knight	MSystems	2022-06-15	Abstract
Sentinel Cards Provide Practical SARS-CoV-2 Monitoring in School Settings.	Victor J Cantú, Karenina Sanders, Pedro Belda-Ferre, Rodolfo A Salido, Rebecca Tsai, Brett Austin, William Jordan, Menka Asudani, Amanda Walster, Celestine G Magallanes, Holly Valentine, Araz Manjoonian, Carrissa Wijaya, Vinton Omaleki, Stefan Aigner, Nathan A Baer, Maryann Betty, Anelizze Castro-Martínez, Willi Cheung, Peter De Hoff, Emily Eisner, Abbas Hakim, Alma L Lastrella, Elijah S Lawrence, Toan T Ngo, Tyler Ostrander, Ashley Plascencia, Shashank Sathe, Elizabeth W Smoot, Aaron F Carlin, Gene W Yeo, Louise C Laurent, Anna Liza Manlutac, Rebecca Fielding-Miller, Rob Knight	MSystems	2022-06-15	Abstract
Potential Immune-Microbiome Interactions in Breast Cancer May Advance Treatment: What's Holding Us Back?	Austin D Swafford, Soni Khandelwal, Shrikant Bhute	Critical Reviews In Immunology	2022-06-13	Abstract
Discovery of Triple Inhibitors of Both SARS-CoV-2 Proteases and Human Cathepsin L.	Ittipat Meewan, Jacob Kattoula, Julius Y Kattoula, Danielle Skinner, Pavla Fajtová, Miriam A Giardini, Brendon Woodworth, James H McKerrow, Jair Lage de Siqueira-Neto, Anthony J O'Donoghue, Ruben Abagyan	Pharmaceuticals (Basel, Switzerland)	2022-06-13	Abstract
Baseline microbiome and metabolome are associated with response to ITIS diet in an exploratory trial in patients with rheumatoid arthritis.	Roxana Coras, Cameron Martino, Julia M Gauglitz, Francesca Cedola, Anupriya Tripathi, Alan K Jarmusch, Maram Alharthi, Marta Fernandez-Bustamante, Meritxell Agustin-Perez, Abha Singh, Soo-In Choi, Tania Rivera, Katherine Nguyen, Tatyana Shekhtman, Tiffany Holt, Susan Lee, Shahrokh Golshan, Pieter C Dorrestein, Rob Knight, Monica Guma	Clinical And Translational Medicine	2022-06-13	Abstract
Diurnal and eating-associated microbial patterns revealed via high-frequency saliva sampling.	Yichen Hu, Amnon Amir, Xiaochang Huang, Yan Li, Shi Huang, Elaine Wolfe, Sophie Weiss, Rob Knight, Zhenjiang Zech Xu	Genome Research	2022-06-10	Abstract
Letter: non-invasive prediction models to exclude cirrhosis in NAFLD-not everyone fits the mould. Authors' reply.	Danielle Brandman, Marie Boyle, Stuart McPherson, Mark L Van Natta, Arun J Sanyal, Kris Kowdley, Brent Neuschwander-Tetri, Naga Chalasani, Manal F Abdelmalek, Norah A Terrault, Art McCullough, Ricki Bettencourt, Cyrielle Caussy, David E Kleiner, Cynthia Behling, James Tonascia, Quentin M Anstee, Rohit Loomba	Alimentary Pharmacology & Therapeutics	2022-06-10	Abstract
Active genetics comes alive: Exploring the broad applications of CRISPR-based selfish genetic elements (or gene-drives): Exploring the broad applications of CRISPR-based selfish genetic elements (or gene-drives).	Valentino M Gantz, Ethan Bier	BioEssays : News And Reviews In Molecular, Cellular And Developmental Biology	2022-06-09	Abstract
Binding of the SARS-CoV-2 envelope E protein to human BRD4 is essential for infection.	Kendra R Vann, Arpan Acharya, Suk Min Jang, Catherine Lachance, Mohamad Zandian, Tina A Holt, Audrey L Smith, Kabita Pandey, Donald L Durden, Dalia El-Gamal, Jacques Côté, Siddappa N Byrareddy, Tatiana G Kutateladze	Structure (London, England : 1993)	2022-06-09	Abstract
The Urobiomes of Adult Women With Various Lower Urinary Tract Symptoms Status Differ: A Re-Analysis.	Cara Joyce, Thomas Halverson, Caroline Gonzalez, Linda Brubaker, Alan J Wolfe	Frontiers In Cellular And Infection Microbiology	2022-06-09	Abstract
Risk assessment with gut microbiome and metabolite markers in NAFLD development.	Howell Leung, Xiaoxue Long, Yueqiong Ni, Lingling Qian, Emmanouil Nychas, Sara Leal Siliceo, Dennis Pohl, Kati Hanhineva, Yan Liu, Aimin Xu, Henrik B Nielsen, Eugeni Belda, Karine Clément, Rohit Loomba, Huating Li, Weiping Jia, Gianni Panagiotou	Science Translational Medicine	2022-06-08	Abstract
Solithromycin in Children and Adolescents With Community-acquired Bacterial Pneumonia.	Jason E Lang, Christoph P Hornik, Carrie Elliott, Adam Silverstein, Chi Hornik, Amira Al-Uzri, Miroslava Bosheva, John S Bradley, Charissa Fay Corazon Borja-Tabora, David Di John, Ana Mendez Echevarria, Jessica E Ericson, David Friedel, Ferenc Gonczi, Marie Grace Dawn Isidro, Laura P James, Krisztina Kalocsai, Ioannis Koutroulis, Istvan Laki, Anna Lisa T Ong-Lim, Marta Nad, Gabor Simon, Salma Syed, Eva Szabo, Daniel K Benjamin, Michael Cohen-Wolkowiez,	The Pediatric Infectious Disease Journal	2022-06-07	Abstract
Correlates of protection against SARS-CoV-2 infection and COVID-19 disease.	David Goldblatt, Galit Alter, Shane Crotty, Stanley A Plotkin	Immunological Reviews	2022-06-05	Abstract
The oral microbiome and breast cancer and non-malignant breast disease, and its relationship with the fecal microbiome in the Ghana Breast Health Study.	Zeni Wu, Doratha A Byrd, Yunhu Wan, Daniel Ansong, Joe-Nat Clegg-Lamptey, Beatrice Wiafe-Addai, Lawrence Edusei, Ernest Adjei, Nicholas Titiloye, Florence Dedey, Francis Aitpillah, Joseph Oppong, Verna Vanderpuye, Ernest Osei-Bonsu, Casey L Dagnall, Kristine Jones, Amy Hutchinson, Belynda D Hicks, Thomas U Ahearn, Jianxin Shi, Rob Knight, Richard Biritwum, Joel Yarney, Seth Wiafe, Baffour Awuah, Kofi Nyarko, Jonine D Figueroa, Rashmi Sinha, Montserrat Garcia-Closas, Louise A Brinton, Emily Vogtmann	International Journal Of Cancer	2022-06-03	Abstract
Changing global epidemiology of liver cancer from 2010 to 2019: NASH is the fastest growing cause of liver cancer.	Daniel Q Huang, Amit G Singal, Yuko Kono, Darren J H Tan, Hashem B El-Serag, Rohit Loomba	Cell Metabolism	2022-06-03	Abstract
Synchrony and idiosyncrasy in the gut microbiome of wild baboons.	Johannes R Björk, Mauna R Dasari, Kim Roche, Laura Grieneisen, Trevor J Gould, Jean-Christophe Grenier, Vania Yotova, Neil Gottel, David Jansen, Laurence R Gesquiere, Jacob B Gordon, Niki H Learn, Tim L Wango, Raphael S Mututua, J Kinyua Warutere, Long'ida Siodi, Sayan Mukherjee, Luis B Barreiro, Susan C Alberts, Jack A Gilbert, Jenny Tung, Ran Blekhman, Elizabeth A Archie	Nature Ecology & Evolution	2022-06-02	Abstract
Targeted isolation of diverse human protective broadly neutralizing antibodies against SARS-like viruses.	Wan-Ting He, Rami Musharrafieh, Ge Song, Katharina Dueker, Longping V Tse, David R Martinez, Alexandra Schäfer, Sean Callaghan, Peter Yong, Nathan Beutler, Jonathan L Torres, Reid M Volk, Panpan Zhou, Meng Yuan, Hejun Liu, Fabio Anzanello, Tazio Capozzola, Mara Parren, Elijah Garcia, Stephen A Rawlings, Davey M Smith, Ian A Wilson, Yana Safonova, Andrew B Ward, Thomas F Rogers, Ralph S Baric, Lisa E Gralinski, Dennis R Burton, Raiees Andrabi	Nature Immunology	2022-06-02	Abstract
Multiomic Analyses of Nascent Preterm Infant Microbiomes Differentiation Suggest Opportunities for Targeted Intervention.	Stephanie B Orchanian, Julia M Gauglitz, Stephen Wandro, Kelly C Weldon, Megan Doty, Kristina Stillwell, Shalisa Hansen, Lingjing Jiang, Fernando Vargas, Kyung E Rhee, Julie C Lumeng, Pieter C Dorrestein, Rob Knight, Jae H Kim, Se Jin Song, Austin D Swafford	Advanced Biology	2022-06-01	Abstract
Epidemiological and Clinical Features of Kawasaki Disease During the COVID-19 Pandemic in the United States.	Jennifer A Burney, Samantha C Roberts, Laurel L DeHaan, Chisato Shimizu, Emelia V Bainto, Jane W Newburger, Samuel Dominguez, Pei-Ni Jone, Preeti Jaggi, Jacqueline R Szmuszkovicz, Anne H Rowley, Nichole Samuy, Paul Scalici, Adriana H Tremoulet, Daniel R Cayan, Jane C Burns,	JAMA Network Open	2022-06-01	Abstract
Risk of Hepatocellular Carcinoma With Tenofovir vs Entecavir Treatment for Chronic Hepatitis B Virus: A Reconstructed Individual Patient Data Meta-analysis.	Darren Jun Hao Tan, Cheng Han Ng, Phoebe Wen Lin Tay, Nicholas Syn, Mark D Muthiah, Wen Hui Lim, Ansel Shao Pin Tang, Kai En Lim, Grace En Hui Lim, Nobuharu Tamaki, Beom Kyung Kim, Margaret Li Peng Teng, James Fung, Rohit Loomba, Mindie H Nguyen, Daniel Q Huang	JAMA Network Open	2022-06-01	Abstract
Optimizing UniFrac with OpenACC Yields Greater Than One Thousand Times Speed Increase.	Igor Sfiligoi, George Armstrong, Antonio Gonzalez, Daniel McDonald, Rob Knight	MSystems	2022-05-31	Abstract
Bacteriophage-Mediated Perturbation of Defined Bacterial Communities in an Model of the Human Gut.	Hedieh Attai, Jacob Wilde, Roland Liu, Jessica Chopyk, Andrew G Garcia, Emma Allen-Vercoe, David Pride	Microbiology Spectrum	2022-05-31	Abstract
Cross-reactive immunity against the SARS-CoV-2 Omicron variant is low in pediatric patients with prior COVID-19 or MIS-C.	Juanjie Tang, Tanya Novak, Julian Hecker, Gabrielle Grubbs, Fatema Tuz Zahra, Lorenza Bellusci, Sara Pourhashemi, Janet Chou, Kristin Moffitt, Natasha B Halasa, Stephanie P Schwartz, Tracie C Walker, Keiko M Tarquinio, Matt S Zinter, Mary A Staat, Shira J Gertz, Natalie Z Cvijanovich, Jennifer E Schuster, Laura L Loftis, Bria M Coates, Elizabeth H Mack, Katherine Irby, Julie C Fitzgerald, Courtney M Rowan, Michele Kong, Heidi R Flori, Aline B Maddux, Steven L Shein, Hillary Crandall, Janet R Hume, Charlotte V Hobbs, Adriana H Tremoulet, Chisato Shimizu, Jane C Burns, Sabrina R Chen, Hye Kyung Moon, Christoph Lange, Adrienne G Randolph, Surender Khurana	Nature Communications	2022-05-27	Abstract
Fueling the fire in the gut.	Chia-Hao Lin, Li-Fan Lu	The Journal Of Experimental Medicine	2022-05-27	Abstract
Humoral and cellular immune memory to four COVID-19 vaccines.	Zeli Zhang, Jose Mateus, Camila H Coelho, Jennifer M Dan, Carolyn Rydyznski Moderbacher, Rosa Isela Gálvez, Fernanda H Cortes, Alba Grifoni, Alison Tarke, James Chang, E Alexandar Escarrega, Christina Kim, Benjamin Goodwin, Nathaniel I Bloom, April Frazier, Daniela Weiskopf, Alessandro Sette, Shane Crotty	Cell	2022-05-27	Abstract
What were the historical reasons for the resistance to recognizing airborne transmission during the COVID-19 pandemic?	Jose L Jimenez, Linsey C Marr, Katherine Randall, Edward Thomas Ewing, Zeynep Tufekci, Trish Greenhalgh, Raymond Tellier, Julian W Tang, Yuguo Li, Lidia Morawska, Jonathan Mesiano-Crookston, David Fisman, Orla Hegarty, Stephanie J Dancer, Philomena M Bluyssen, Giorgio Buonanno, Marcel G L C Loomans, William P Bahnfleth, Maosheng Yao, Chandra Sekhar, Pawel Wargocki, Arsen K Melikov, Kimberly A Prather	Indoor Air	2022-05-25	Abstract
Maternal diet is associated with human milk oligosaccharide profile.	Marta Selma-Royo, Sonia González, Miguel Gueimonde, Melinda Chang, Annalee Fürst, Cecilia Martínez-Costa, Lars Bode, Maria Carmen Collado	Molecular Nutrition & Food Research	2022-05-25	Abstract
The Ubiquitous Human Skin Commensal Staphylococcus hominis Protects against Opportunistic Pathogens.	Morgan M Severn, Michael R Williams, Ali Shahbandi, Zoie L Bunch, Laurie M Lyon, Amber Nguyen, Livia S Zaramela, Daniel A Todd, Karsten Zengler, Nadja B Cech, Richard L Gallo, Alexander R Horswill	MBio	2022-05-24	Abstract
Demographic and clinical characteristics associated with variations in antibody response to BNT162b2 COVID-19 vaccination among healthcare workers at an academic medical centre: a longitudinal cohort analysis.	Joseph E Ebinger, Sandy Joung, Yunxian Liu, Min Wu, Brittany Weber, Brian Claggett, Patrick G Botting, Nancy Sun, Matthew Driver, Yu Hung Kao, Briana Khuu, Timothy Wynter, Trevor-Trung Nguyen, Mona Alotaibi, John C Prostko, Edwin C Frias, James L Stewart, Helen S Goodridge, Peter Chen, Stanley C Jordan, Mohit Jain, Sonia Sharma, Justyna Fert-Bober, Jennifer E Van Eyk, Margo B Minissian, Moshe Arditi, Gil Y Melmed, Jonathan G Braun, Dermot P B McGovern, Susan Cheng, Kimia Sobhani	BMJ Open	2022-05-24	Abstract
A Prebiotic Diet Alters the Fecal Microbiome and Improves Sleep in Response to Sleep Disruption in Rats.	Samuel J Bowers, Keith C Summa, Robert S Thompson, Antonio González, Fernando Vargas, Christopher Olker, Peng Jiang, Christopher A Lowry, Pieter C Dorrestein, Rob Knight, Kenneth P Wright, Monika Fleshner, Fred W Turek, Martha H Vitaterna	Frontiers In Neuroscience	2022-05-24	Abstract
Supporting the Art: Medication Adherence Patterns in Persons Prescribed Ingestible Sensor-enabled Oral Pre-Exposure Prophylaxis to Prevent Human Immunodeficiency Virus (HIV) Infection.	Sara H Browne, Florin Vaida, Anya Umlauf, Amanda J Tucker, Terrence F Blaschke, Constance A Benson	Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America	2022-05-23	Abstract
Fine scale transitions of the microbiota and metabolome along the gastrointestinal tract of herbivorous fishes.	Wesley J Sparagon, Emily C Gentry, Jeremiah J Minich, Lisa Vollbrecht, Lieve M L Laurens, Eric E Allen, Neil A Sims, Pieter C Dorrestein, Linda Wegley Kelly, Craig E Nelson	Animal Microbiome	2022-05-23	Abstract
Ancient plant-like terpene biosynthesis in corals.	Immo Burkhardt, Tristan de Rond, Percival Yang-Ting Chen, Bradley S Moore	Nature Chemical Biology	2022-05-23	Abstract